Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq159 96.9 3e-15 >seq159 Length=219009 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||| || || | ||| | || ||||||||||| || ||||| Sbjct 157522 TCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAG 157463 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | ||||| ||| ||||| || ||||||| || ||| Sbjct 157462 ATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTCACATTT 157403 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||||||||| | || ||||| || || || | || || || Sbjct 157402 TCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGTGTCTTCACG 157343 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 157342 AAAATCTGCAT 157332 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||| || || | ||| | || ||||||||||| || ||||| Sbjct 158982 TCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAG 158923 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||||||||| | ||||| ||| ||||| || |||||| || ||| Sbjct 158922 ATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCCTTAACATTT 158863 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||| | || || ||||| || || | || || ||| Sbjct 158862 TCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTGACA 158803 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 158802 AAAATTTGCAT 158792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||||||||||||||| ||| | || | || |||||||| ||||| ||||| Sbjct 159895 TCCTTCTGAATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTGTTTACCAGCAAAA 159836 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || |||||||| || | ||||| || ||||| || ||||| || ||| Sbjct 159835 ATAAGACGCTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTC 159776 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || | || ||||||| || || || ||||| |||||||| || || Sbjct 159775 TCGATCGTGTCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACG 159716 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 159715 AAGATCTGCAT 159705 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||||||||||| || || || || | |||| |||| |||||||| Sbjct 158218 ATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGCCGTCTTCCAACTG 158159 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| || || ||||| ||||| | ||| | || ||||| || |||||| Sbjct 158158 CTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTT 158099 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || | |||||| |||| || || || ||||| || Sbjct 158098 AGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCTGT 158039 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 158038 AAGGGTCTTGACAAAGATCTGCAT 158015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380893949550846