Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1672 102 2e-16 >seq1672 Length=38749 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||| | || | || ||||||||||| || | || || |||||||| Sbjct 32561 AGGCCTGGCATAAGTCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGCTTCCAGAGAAA 32502 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 || || || || ||||| || || || | | ||| || | |||| || |||||| || Sbjct 32501 AATATCCCTTCAACTGCTGCAAAAGCAATCACCCTTTCAGCAAAAGTAGAGTTCTTATCA 32442 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 | |||||||| || |||||||| ||||||||||| | ||||||||| || || | ||| Sbjct 32441 GCAATCCAGGACAGAGCCCAGTCAGCCTTCTTCTTAACGCATGGCATGGTTTCAACGGC 32383 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || || |||||||| || || || ||||| || ||||| ||| | ||| || Sbjct 32219 GTACATTTCGGAATGCACATTTTCCATCGCAATCTGAAATCCGTAAAAGCATCGGGCTTC 32160 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 || |||||||| | ||||| ||||| || || || || || || ||||| || Sbjct 32159 GGTGACTTGCACTTCCTGGCTGAATCGCTCCACCAAGTTTTCGTTAACAATTCCATCAGA 32100 Query 48544 AGCAGCAAAGAAGGCAAGGACATG 48567 || ||||||||||| | |||||| Sbjct 32099 TGCTGCAAAGAAGGCCAAGACATG 32076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931423321607680