Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq159 96.9 6e-15 seq463 84.2 4e-11 >seq159 Length=219009 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || || ||||| | || | ||| || || || |||||| Sbjct 158016 ATACCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 157957 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || | ||| || | ||| ||||| ||||| || || | |||||| || || Sbjct 157956 CTGAGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTG-TCTGGG 157898 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || |||| || | ||| ||||| || || | || Sbjct 157897 GGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCC 157838 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || ||||| || ||||| ||||| || ||||| || ||||| Sbjct 157837 ACCTCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACAAAGATCTGCAT 157788 Score = 84.2 bits (92), Expect = 4e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || || ||||| | || | ||| || || || |||||| Sbjct 159478 ATACCACCTCTGAGACGGAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 159419 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | |||| ||| || | ||| ||||| ||||| || || | ||| || || || Sbjct 159418 CTGAGGGTTCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGG 159359 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | |||| ||| || || |||| ||| Sbjct 159358 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCC 159299 Query 193311 ACTTCTAGAGTTATAGT-TTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||| || || | || || ||||| || ||||| Sbjct 159298 ACCTCAAGGGTGATCGTCTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 159248 >seq463 Length=112955 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || || ||||| | || || ||| || | ||||||||||||||| || || | Sbjct 58484 AATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATCAACCG 58425 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || ||||| || || || || || |||| || | ||| || || Sbjct 58424 CTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGT 58365 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || | || || || || || || |||||||| || || ||||| || || || || Sbjct 58364 GTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAAATCTG 58305 Query 193358 CATTTT 193363 |||||| Sbjct 58304 CATTTT 58299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899548668116640