Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq159 102 2e-16 seq47 100 6e-16 seq463 87.8 4e-12 >seq159 Length=219009 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||| || |||||| || || Sbjct 158565 ATACCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCC 158506 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||||| | || ||||||||||||||||||||||| | | ||| ||||| || Sbjct 158505 GACAGTGTTCGGCCGTCTTCCAATTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGG 158446 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || ||||| || ||||| ||||| Sbjct 158445 GGAATACCTTCCTTGTCTTGAATTTT 158420 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || | ||| | || | ||||| || ||||| || Sbjct 158244 ATACCACCACGAAGACGAAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCT 158185 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||||||| | || ||||| || || ||||||||||| | | ||| ||||| || Sbjct 158184 GACAATGTTCGGCCGTCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGG 158125 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| || ||||| || | || || | || Sbjct 158124 GGGATACCTTCCTTATCTTGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCC 158065 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || || || | || || | ||| |||||||| Sbjct 158064 ACTTCCAATGTGATGGTCTTTCCTGTAAGGGTCTTGACAAAGATCTGCAT 158015 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| |||||||| | || ||| |||| ||||| |||||||||||||| || | | | Sbjct 159886 ATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTGTTTACCAGCAAAAATAAGACGC 159827 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || || || || ||||| |||||||| || || || ||||| || | Sbjct 159826 TGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATCGTG 159767 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || | |||||| || | ||| ||||| || ||||| || || || | || |||||| Sbjct 159766 TCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGC 159707 Query 192535 AT 192536 || Sbjct 159706 AT 159705 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || | ||| | || | ||||| || ||||| || Sbjct 159249 ATGCCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCT 159190 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||||||||| ||||||||||| | | ||| || || || Sbjct 159189 GAAAGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGG 159130 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || | |||| Sbjct 159129 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCT 159070 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || ||||| || ||||| || ||||| | || |||||||| Sbjct 159069 ACCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || | ||| | |||| || || |||||| || || Sbjct 159021 ATGCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCG 158962 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || |||| ||||| || || ||||||||||| | | ||||||||| || Sbjct 158961 CTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGTTGATCTGGG 158902 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| || | || || | || Sbjct 158901 GGAATGCCTTCCTTATCTTGAATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGGCTCC 158842 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||| ||||| | || || | ||| || |||||| Sbjct 158841 ACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATTTGCATT 158791 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | ||| | ||| || ||| || || || Sbjct 159478 ATACCACCTCTGAGACGGAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 159419 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| |||| || | ||| || ||||||||||| || | ||| || || || Sbjct 159418 CTGAGGGTTCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGG 159359 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || ||||| || | || || | || Sbjct 159358 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCC 159299 Query 192487 ACTTCTAGAGTAATGGT-TTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || ||| ||||| || || || | ||| |||||||| Sbjct 159298 ACCTCAAGGGTGATCGTCTTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 159248 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | ||| | ||| || ||| || || || Sbjct 157789 ATACCACCTCTGAGACGGAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 157730 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || |||| || | ||| || ||||||||||| || | ||| || || || Sbjct 157729 CTGAGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGG 157670 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || ||||| || | || || | || Sbjct 157669 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCC 157610 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| || || || | ||| |||||||| Sbjct 157609 ACCTCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 157560 >seq47 Length=390960 Score = 100 bits (110), Expect = 6e-16 Identities = 165/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||||| ||||| | || | ||| | |||| ||| ||| || || || ||||| Sbjct 277398 ATACCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAATC 277456 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG--ATCA 192423 ||| | || || |||| ||||| ||||| ||||||||||| | | ||| | || Sbjct 277457 AGAAAGGGTACGGCCATCCTCCAACTGTTTTCCAGCAAAGATAAGACGCTGCCGGCGTCT 277516 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 ||||| || ||||| ||||| || || || || ||||| |||| ||||| | Sbjct 277517 GGTGG-ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCTGAAGGC 277575 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 277576 TCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 277628 Score = 96.9 bits (106), Expect = 7e-15 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||||| ||||| | || | ||| | |||| ||| ||| || || || ||||| Sbjct 276248 ATACCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAATC 276306 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTT-ACCAGCAAAGATTAATCTCTGTTGATCAG 192424 ||| | || || |||| ||||| ||||| ||||||||| || | | ||| || || | Sbjct 276307 AGAAAGGGTACGGCCATCCTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTG 276366 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 |||| || ||||| ||||| || || || || ||||| || | || | || Sbjct 276367 GTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTT 276426 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 276427 CCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478 Score = 96.9 bits (106), Expect = 7e-15 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTA-AGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAAT 192364 |||||||||| ||||| | || | ||| | |||| ||| ||| || || || |||| Sbjct 276703 ATACCACCTCGGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAAT 276761 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 |||| | || || |||| ||||| |||||||||||||| || | | ||| || || | Sbjct 276762 CAGAAAGGGTACGGCCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTG 276821 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 |||| || ||||| ||||| || || || || ||||| || | || | || Sbjct 276822 GTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTT 276881 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 276882 CCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933 Score = 86.0 bits (94), Expect = 1e-11 Identities = 167/236 (71%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||||| ||||| | || | ||| | |||| ||| ||| || || || ||||| Sbjct 277166 ATACCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAATC 277224 Query 192366 AGATAATGTTCGTTC-ATCATCCAAT-TGTTTACCAGCAAAGATTAA-TCTC-TGTTGAT 192421 ||| | || || | ||| ||||| |||||||||||||| | ||| | | || || | Sbjct 277225 AGAAAGGGTACGGCCCATCCTCCAAACTGTTTACCAGCAAAAAATAAGACGCTTGCTGGT 277284 Query 192422 C-AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 | ||||| | |||||| ||||| || || || || ||||| |||| ||||| Sbjct 277285 CTGGGTGGGA-TCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCTGAA 277343 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 277344 GGCTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 277399 >seq463 Length=112955 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || ||||| || | ||| | | |||| || | |||||| || ||||||| Sbjct 58490 CTTTTGA-ATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || | ||| ||||| || || ||||| || || || || || || || ||||| Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 58372 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || | ||| || || || || ||||||||||| || | ||||||| | Sbjct 58371 CGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGA 58312 Query 192527 ATATCTGCATTTT 192539 | ||||||||||| Sbjct 58311 AAATCTGCATTTT 58299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984361406462700