Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq159 109 1e-18 seq47 89.7 9e-13 >seq159 Length=219009 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || | || ||| | || ||||| ||||||||||||||||| | | Sbjct 159887 AATATTGTAATCAGAGAGAGTACGTCCATCCTCCAACTGTTTACCAGCAAAAATAAGACG 159828 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| || || || ||||| |||||||| || || || ||||| || || Sbjct 159827 CTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATCGT 159768 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || | |||||| || | ||| ||||| || ||||| || || || | ||| ||||| Sbjct 159767 GTCGCTGGGTTCTACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 159708 Query 172067 CAT 172069 ||| Sbjct 159707 CAT 159705 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| || || | || | ||| | || | ||||| ||| ||||| ||| Sbjct 159249 ATGCCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCT 159190 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || ||||||||||| |||||||| || | | ||| ||||| || Sbjct 159189 GAAAGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGG 159130 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| || || || | |||| Sbjct 159129 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCT 159070 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| || ||||| || ||||| | ||| |||||||| Sbjct 159069 ACCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020 >seq47 Length=390960 Score = 89.7 bits (98), Expect = 9e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | || | ||| | |||| ||| || ||| || ||||| Sbjct 276248 ATACCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCA 276307 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTT-ACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | | || | || ||||| ||||| |||||||||||| | | ||| ||||| || Sbjct 276308 GAAAGGGTACGGCCATCCTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGG 276367 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || ||||| ||||| || || || || ||||| || || || | ||| Sbjct 276368 TGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTC 276427 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| | || || | || |||||||| Sbjct 276428 CACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478 Score = 89.7 bits (98), Expect = 9e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTA-AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 |||||||||| || || | || | ||| | |||| ||| || ||| || ||||| Sbjct 276703 ATACCACCTCGGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATC 276762 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | | || | || ||||| ||||||||||||||||| | | ||| ||||| || Sbjct 276763 AGAAAGGGTACGGCCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTGG 276822 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || ||||| ||||| || || || || ||||| || || || | ||| Sbjct 276823 TGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTC 276882 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| | || || | || |||||||| Sbjct 276883 CACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | || | ||| | |||| ||| || ||| || ||||| Sbjct 276477 ATACCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCA 276536 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||| || || ||||||||||| | | ||| ||||| ||| Sbjct 276537 GAAAGGGTGCGACCATCCTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGT 276596 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || ||| || ||||| || || || | ||| Sbjct 276597 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCC 276656 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 || || ||||| ||||| || ||||| Sbjct 276657 ACCTCGAGAGTGATGGTCTTGCCAGT 276682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905029623891600