Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq159 122 6e-23 seq463 98.7 6e-16 seq263 86.0 4e-12 >seq159 Length=219009 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| || ||||||||||||||||| || ||| | || |||| Sbjct 159231 AGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCT 159172 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || || || ||||| || || ||||||||| | || | || |||||||| Sbjct 159171 TCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 159112 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || |||| ||| ||| || || || | ||| |||| Sbjct 159111 TGGATCTTGGCCTTGAC--ATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGG 159054 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| || | || || || |||||||||||| Sbjct 159053 TCTTTCCAGTCAAAGTTTTGACGAAGATCTGCATG 159019 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||| || ||||| ||||| ||| | || |||| Sbjct 157771 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCC 157712 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| || ||||||||| | || | || |||||||| Sbjct 157711 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 157652 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | | || | ||| | ||| || |||| ||| || ||| Sbjct 157651 TGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTC 157592 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || | ||||| ||||||||||||||| Sbjct 157591 TTTCCAGTCAAAGTCTTGACAAAGATCTGCATG 157559 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||| || ||||| ||||| ||| | || |||| Sbjct 159460 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCC 159401 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| || ||||||||| | || | || |||||||| Sbjct 159400 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 159341 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | | || | ||| | ||| || |||| ||| || ||| Sbjct 159340 TGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTC 159281 Query 34946 -TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || | ||||| ||||||||||||||| Sbjct 159280 TTTTCCAGTCAAAGTCTTGACAAAGATCTGCATG 159247 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| || || |||||||||||||| || | | || | || Sbjct 158226 AGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGCCGTCT 158167 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| || ||||| || || ||||| ||| | || | || ||||| || Sbjct 158166 TCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCT 158107 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | ||| || ||| || || | || |||||| Sbjct 158106 TGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTC 158047 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || |||||||| |||||||||||||| Sbjct 158046 TTTCCTGTAAGGGTCTTGACAAAGATCTGCAT 158015 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| || || ||||| ||| | || |||| Sbjct 159688 AGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGCTGAGGGTACGGCCATCC 159629 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| || || |||||| | || | || |||||||| Sbjct 159628 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCT 159569 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | | || | ||| || || || || | || || ||| Sbjct 159568 TGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCACCTCCAATGTGATAGTC 159509 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || ||||||||||| Sbjct 159508 TTTCCTGTAAGCGTCTTAACGAAGATCTGCAT 159477 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| ||||| ||||| ||| | || |||| Sbjct 157998 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCATCC 157939 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||||| || || | |||| | || | || ||||| || Sbjct 157938 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTG-TTGTCTGGGGGAATTCCTTCCTTATCT 157880 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | | || | ||| || || || || | || || ||| Sbjct 157879 TGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCACCTCCAATGTGATAGTC 157820 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| |||||||||||||| Sbjct 157819 TTTCCTGTAAGCGTCTTAACAAAGATCTGCAT 157788 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| || || || || || ||||| ||| | || |||| Sbjct 158775 AGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACCATCC 158716 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || ||||| || || ||||| ||| | || | || ||||| || Sbjct 158715 TCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCT 158656 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || |||| ||| ||| || || || | || |||| Sbjct 158655 TGGATCTTTGCCTTGAC--ATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGATGG 158598 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || | ||||| || ||||||||||| Sbjct 158597 TCTTTCCAGTCAACGTCTTGACGAAGATCTGCAT 158564 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || || || ||||| ||| |||| |||| |||| |||||||| || ||| Sbjct 157522 TCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAG 157463 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| || ||| | || | || ||||| || | || ||| || || | Sbjct 157462 ATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTCACATTT 157403 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | ||| || |||| ||| || ||||| || ||||| ||||| || Sbjct 157402 TCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGTGTCTTCACG 157343 Query 34967 AAGATCTGCATGAT 34980 || ||||||||||| Sbjct 157342 AAAATCTGCATGAT 157329 >seq463 Length=112955 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| |||||||| || || || || | | |||| || ||||| |||||||| |||| Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || ||||| || | || | ||||||||||| | || || ||||| || Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATT 58374 Query 34908 CT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || |||| ||| ||| || || |||| || ||||| || ||||||||||| || || Sbjct 58373 CTCGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAAC 58314 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 58313 GAAAATCTGCAT 58302 >seq263 Length=158529 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| ||| | | |||| || || || || ||||| || Sbjct 64860 CTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAA 64919 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || |||||| | || | ||||||||||| | || || ||||| Sbjct 64920 GATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 64979 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| ||| || || |||| ||| || || || || || | || || || Sbjct 64980 TTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCAC 65039 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 65040 AAAGATCTGCAT 65051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325655479879838