Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq263 125 6e-24 seq159 123 2e-23 seq463 114 1e-20 seq47 104 2e-17 >seq263 Length=158529 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| | ||| | ||| || || ||||||||||| || || || ||| | | ||| Sbjct 64840 AGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCT 64899 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| ||||| || ||| | ||||| | || || || || || || ||||| |||||| Sbjct 64900 TCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCT 64959 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || |||||| |||| | ||| ||| |||| || ||||| || |||||| Sbjct 64960 TGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTT 65019 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| ||||| |||||||| Sbjct 65020 TTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051 >seq159 Length=219009 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| ||||||||||| ||||||||||| || | || ||| || Sbjct 159235 ACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCC 159176 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||||||||||| | || | | ||||| || || ||||| || || || Sbjct 159175 ATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTT 159116 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | |||||| ||||||| || | || || Sbjct 159115 GTCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGAT 159056 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || ||||| || || |||||||| Sbjct 159055 GGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| |||||||||||||| || || || || | ||| ||| Sbjct 158779 ACGGAGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACC 158720 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | |||||||| || |||||||| || || Sbjct 158719 ATCCTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTT 158660 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| |||||| | || | |||||| |||| || || | ||| || Sbjct 158659 ATCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGAT 158600 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || || || || || |||||||| Sbjct 158599 GGTCTTTCCAGTCAACGTCTTGACGAAGATCTGCAT 158564 Score = 109 bits (120), Expect = 4e-19 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || || | |||||| ||||||||||||||||||||||| || | |||| || || Sbjct 158230 ACGAAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGACAAT-GTTCGGC 158172 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | || || |||||| | || | | |||||||| || || ||||| || | Sbjct 158171 CGTCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCT 158112 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | ||||| ||| || | || ||| |||| | |||||||| | || ||||| | || Sbjct 158111 TATCTTG-AATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTG 158053 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || | ||| || ||||| |||||||| Sbjct 158052 ATGGTCTTTCCTGTAAGGGTCTTGACAAAGATCTGCAT 158015 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || ||||| ||||| || || || || | ||||||| Sbjct 159007 ACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACC 158948 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || |||||| | || | | || ||||| || ||||| || || || Sbjct 158947 ATCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTT 158888 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | || ||| |||| | ||||| ||| | || || |||||||| | Sbjct 158887 ATCTTG-AATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGA 158829 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||||||||| | ||| || ||||| || |||||| Sbjct 158828 TGGTTTTGCCAGTAAGGGTCTTGACAAAAATTTGCATT 158791 >seq463 Length=112955 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 ||||||||||| ||||| | | || | ||| ||||||||||| || ||| | ||| Sbjct 58489 TTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGATC 58430 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 || | ||||||||||| || || ||||| ||||| || | || |||||| | || Sbjct 58429 AACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 58370 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAAT 29778 | |||||| |||| || ||||| || || ||||| || || | ||||||||| || Sbjct 58369 ATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGAAA 58310 Query 29779 ATCTGCATTTT 29789 ||||||||||| Sbjct 58309 ATCTGCATTTT 58299 >seq47 Length=390960 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || || || ||||||||||| ||||| | || ||||||| Sbjct 276491 ACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGACC 276550 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || |||||| | || | | ||||| || || || || ||||| || Sbjct 276551 ATCCTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTT 276610 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || |||||| |||| | |||||| |||| || || ||||| || Sbjct 276611 ATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGAT 276670 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAA 29777 || |||||||| | || || ||||| Sbjct 276671 GGTCTTGCCAGTAAGAGTCTTGACAAA 276697 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || || || ||||||||||| ||||| | || ||| || Sbjct 276718 ACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCC 276777 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||| |||||| | || | | ||||| || || || || || || || Sbjct 276778 ATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTT 276837 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || || ||| |||| | |||||| |||| || || ||||| || Sbjct 276838 ATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGAT 276897 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | || || ||||| |||||||| Sbjct 276898 GGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || || || ||||||||||| ||||| | || ||| || Sbjct 276262 ACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCC 276321 Query 29631 ATCATCGAGTTG-TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || ||| |||||| | || | | ||||| || || || || || || | Sbjct 276322 ATCCTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCT 276381 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | || || | || || ||| |||| | |||||| |||| || || ||||| | Sbjct 276382 TATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGA 276441 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | || || ||||| |||||||| Sbjct 276442 TGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || || || ||||||||||| ||||| | || ||| || Sbjct 277412 ACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCC 277471 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG--ATCCGGCGGAATACCCTCT 29688 ||| || | ||||| |||||| | || | | ||| | || || || || || || Sbjct 277472 ATCCTCCAACTGTTTTCCAGCAAAGATAAGACGCTGCCGGCGTCTGGTGG-ATCCCTTCC 277530 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || || || | || || ||| |||| | |||||| ||| | || || || ||||| Sbjct 277531 TTATCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTG 277590 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| | || || ||||| |||||||| Sbjct 277591 ATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 277628 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCT--TTTTGAATGTTATAATCCGCAA-TGGTGCG 29627 ||| || || | |||||| || || || ||||||||||| ||||| | || |||||| Sbjct 276946 ACGAAGGACAAGATGAAGGGTAGAGACTCCTTTTGAATGTTGTAATCAGAAAGGGGTGCG 277005 Query 29628 AGAATCATCGAGTTGTTTGCCA--GCATATATCAATCTTTGCTGATCCGGCGGAATACCC 29685 | ||| | | || || ||| || | || | | ||||| || || || || ||| Sbjct 277006 ACCATCTCCCAACTGCTTTCCAAGCCAAAAATAAGACGCTGCTGGTCTGGTGGGATTCCC 277065 Query 29686 TCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAG 29744 || || ||||| ||| || | |||||| |||| | |||||| |||| || || || Sbjct 277066 TCCTTATCTTGGAATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCGAG 277125 Query 29745 AGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||| | || || ||||| || ||||| Sbjct 277126 AGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATTTGCAT 277167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385175058935682