Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq159 114 3e-20 seq47 95.1 3e-14 >seq159 Length=219009 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || |||||||| || ||||| ||||||||||| |||||| Sbjct 158018 CAGATCTTTGTCAAGACCCTTACAGGAAAGACCATCACATTGGAAGTGGAGCCCTCTGAC 158077 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||||| || ||||| || || || || Sbjct 158078 ACCATCGAAAATGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAGCAG 158137 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || ||||||||||||||||| || | || ||| | || || ||| | Sbjct 158138 CGTCTCATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGAACATTGTCAGACTATAACATT 158197 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || ||||| || || ||||| || || Sbjct 158198 CAAAAAGAATCCACCCTTCATCTCGT 158223 Score = 111 bits (122), Expect = 4e-19 Identities = 149/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| |||||||| || ||||| ||||| |||||| |||||| Sbjct 157791 CAGATCTTTGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCTGAC 157850 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||||| || ||||||||| || ||| || Sbjct 157851 ACTATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGAC-AACAG 157909 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||| | || ||||| | || | ||| |||||| || Sbjct 157910 CGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAACATC 157969 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 157970 CAGAAGGAGTCCACCCTTCATCTCGT 157995 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| | || ||||| ||||||||| ||||| Sbjct 157347 AAGACACTCACTGGCAAGACGATCACCCTTGAGGTGGAGCCTTCTGACACTATCGAAAAT 157406 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||||||| || ||||| ||| || || ||| | || ||||| Sbjct 157407 GTGAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAACAACGTCTCATCTTT 157466 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||||||||||||||| | || | ||| ||||| |||| || || ||| Sbjct 157467 GCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAATATCCAAAAGGAATCT 157526 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 157527 ACACTCCATCTCGT 157540 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| |||||||| || ||||| ||||| |||||| |||||||| ||||| Sbjct 159492 AAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCTGACACTATCGAAAAC 159551 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || |||||||| || ||| || | | ||||| Sbjct 159552 GTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCAGACCAACAGCGTTTGATCTTT 159611 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | || ||||| | || | ||| ||||| ||||||| ||||| Sbjct 159612 GCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAATATCCAGAAGGAGTCC 159671 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || || | | |||||| Sbjct 159672 ACCCTTCATCTCGTCCTCCGTCTTCGA 159698 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || ||||| |||||| | || ||||| ||| ||||| | Sbjct 158800 TTTTGTCAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGCCTTCCGACACCAT 158859 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 |||| || ||| ||||||||||| || ||||| ||| || || || | || Sbjct 158860 CGAAAATGTTAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAACAGCGTCT 158919 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || |||||||||||||||||||| | || | ||| ||||| |||| || Sbjct 158920 CATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAATATCCAAAA 158979 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 || ||||| || || || || Sbjct 158980 GGAATCTACACTCCATCTCGT 159000 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||||||||| || ||| ||| Sbjct 159708 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTAGAACCCAGCGAC 159767 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| ||| || ||| || Sbjct 159768 ACGATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAACAG 159827 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || || || |||||||| |||||| | ||| | | |||||||| | Sbjct 159828 CGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGACGTACTCTCTCTGATTACAATATT 159887 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || ||||| || ||||| Sbjct 159888 CAGAAGGAATCGACTCTGCATCTTGT 159913 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || ||||| || ||||| || || || ||| |||| Sbjct 159023 CAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTAGAGGTAGAACCCAGTGAC 159082 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| ||| || ||| || Sbjct 159083 ACGATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAG 159142 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || || || |||||||||||| | || | | || || ||| | Sbjct 159143 CGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGACGTACCCTTTCAGACTATAACATT 159202 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || || ||||| || || Sbjct 159203 CAGAAAGAATCCACCCTTCATCTCGT 159228 >seq47 Length=390960 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/202 (71%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 206178 ATTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAG 206236 |||||| ||| || || || || || || |||||| | || |||||| |||||| Sbjct 276699 ATTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGTGACACCA 276640 Query 206237 TCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 | ||| || ||| ||||| ||||| || || ||||| || ||| || | | Sbjct 276639 TTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGACCAGCAGCGTC 276580 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 |||| || || |||||||||||||| ||||| | || | | ||||||||| | || | Sbjct 276579 TTATTTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTTTCTGATTACAACATTCAAA 276520 Query 206357 AAGAGTCTACTCTTCACCTTGT 206378 | |||||||| ||||| ||||| Sbjct 276519 AGGAGTCTACCCTTCATCTTGT 276498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || |||||| | || ||||| ||| ||| Sbjct 276246 CAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAGCCTTCAGAC 276187 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || || ||||| || || || ||||| || || ||| || Sbjct 276186 ACTATTGAAAATGTGAAAGGCAAGATCCAGGATAAGGAAGGGATCCA-CCAGACCAGCAG 276128 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || ||| |||| ||| ||||| | || || |||||||||| | Sbjct 276127 CGTCTTATTTTTGCA--AAAACAGT-GGAGGATGGCCGTACCTTCTCCGATTACAATATT 276071 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||||||||||||| | ||||| Sbjct 276070 CAAAAGGAGTCAACTCTTCACCTTGTTTTGCGTCTTCG 276033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181678434173242