Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq159 114 3e-20
seq47 95.1 3e-14
>seq159
Length=219009
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || |||||||| || ||||| ||||||||||| ||||||
Sbjct 158018 CAGATCTTTGTCAAGACCCTTACAGGAAAGACCATCACATTGGAAGTGGAGCCCTCTGAC 158077
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| ||||| || ||| ||||||||||| || ||||| || || || ||
Sbjct 158078 ACCATCGAAAATGTTAAGGCTAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAGCAG 158137
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||| || ||||||||||||||||| || | || ||| | || || ||| |
Sbjct 158138 CGTCTCATCTTTGCTGGAAAGCAGTTGGAAGACGGCCGAACATTGTCAGACTATAACATT 158197
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
|| ||||| || || ||||| || ||
Sbjct 158198 CAAAAAGAATCCACCCTTCATCTCGT 158223
Score = 111 bits (122), Expect = 4e-19
Identities = 149/206 (72%), Gaps = 1/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || ||||| |||||||| || ||||| ||||| |||||| ||||||
Sbjct 157791 CAGATCTTTGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCTGAC 157850
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| ||||| || ||| ||||||||||| || ||||||||| || ||| ||
Sbjct 157851 ACTATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGAC-AACAG 157909
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||| || |||||||| | || ||||| | || | ||| |||||| ||
Sbjct 157910 CGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAACATC 157969
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || ||||| || ||
Sbjct 157970 CAGAAGGAGTCCACCCTTCATCTCGT 157995
Score = 107 bits (118), Expect = 5e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || |||||||| | || ||||| ||||||||| |||||
Sbjct 157347 AAGACACTCACTGGCAAGACGATCACCCTTGAGGTGGAGCCTTCTGACACTATCGAAAAT 157406
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| |||||||||||| || ||||| ||| || || ||| | || |||||
Sbjct 157407 GTGAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAACAACGTCTCATCTTT 157466
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| |||||||||||||||||||| | || | ||| ||||| |||| || || |||
Sbjct 157467 GCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAATATCCAAAAGGAATCT 157526
Query 206365 ACTCTTCACCTTGT 206378
|| || || || ||
Sbjct 157527 ACACTCCATCTCGT 157540
Score = 104 bits (114), Expect = 6e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| ||||| |||||||| || ||||| ||||| |||||| |||||||| |||||
Sbjct 159492 AAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCTGACACTATCGAAAAC 159551
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||||||||| || |||||||| || ||| || | | |||||
Sbjct 159552 GTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCAGACCAACAGCGTTTGATCTTT 159611
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| |||||||| | || ||||| | || | ||| ||||| ||||||| |||||
Sbjct 159612 GCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAATATCCAGAAGGAGTCC 159671
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| ||||| || || | | ||||||
Sbjct 159672 ACCCTTCATCTCGTCCTCCGTCTTCGA 159698
Score = 98.7 bits (108), Expect = 2e-15
Identities = 143/201 (71%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| ||| || || || || ||||| |||||| | || ||||| ||| ||||| |
Sbjct 158800 TTTTGTCAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGCCTTCCGACACCAT 158859
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|||| || ||| ||||||||||| || ||||| ||| || || || | ||
Sbjct 158860 CGAAAATGTTAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAACAGCGTCT 158919
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||||| || |||||||||||||||||||| | || | ||| ||||| |||| ||
Sbjct 158920 CATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAATATCCAAAA 158979
Query 206358 AGAGTCTACTCTTCACCTTGT 206378
|| ||||| || || || ||
Sbjct 158980 GGAATCTACACTCCATCTCGT 159000
Score = 87.8 bits (96), Expect = 4e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || ||||||||||| || ||| |||
Sbjct 159708 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTAGAACCCAGCGAC 159767
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| ||||| || ||||| ||| || ||| ||
Sbjct 159768 ACGATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAACAG 159827
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||| || || || || |||||||| |||||| | ||| | | |||||||| |
Sbjct 159828 CGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGACGTACTCTCTCTGATTACAATATT 159887
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| || || ||||| || |||||
Sbjct 159888 CAGAAGGAATCGACTCTGCATCTTGT 159913
Score = 84.2 bits (92), Expect = 5e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| | || ||||| || ||||| || || || ||| ||||
Sbjct 159023 CAGATCTTCGTCAAAACTTTGACTGGAAAGACCATCACCTTAGAGGTAGAACCCAGTGAC 159082
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| ||||| || ||||| ||| || ||| ||
Sbjct 159083 ACGATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAGCAG 159142
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| |||||||| || || || || |||||||||||| | || | | || || ||| |
Sbjct 159143 CGTCTTATCTTTGCTGGCAAACAATTGGAAGATGGACGTACCCTTTCAGACTATAACATT 159202
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
|||||||| || || ||||| || ||
Sbjct 159203 CAGAAAGAATCCACCCTTCATCTCGT 159228
>seq47
Length=390960
Score = 95.1 bits (104), Expect = 3e-14
Identities = 143/202 (71%), Gaps = 1/202 (0%)
Strand=Plus/Minus
Query 206178 ATTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAG 206236
|||||| ||| || || || || || || |||||| | || |||||| ||||||
Sbjct 276699 ATTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGTGACACCA 276640
Query 206237 TCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296
| ||| || ||| ||||| ||||| || || ||||| || ||| || | |
Sbjct 276639 TTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGACCAGCAGCGTC 276580
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356
|||| || || |||||||||||||| ||||| | || | | ||||||||| | || |
Sbjct 276579 TTATTTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACCCTTTCTGATTACAACATTCAAA 276520
Query 206357 AAGAGTCTACTCTTCACCTTGT 206378
| |||||||| ||||| |||||
Sbjct 276519 AGGAGTCTACCCTTCATCTTGT 276498
Score = 86.0 bits (94), Expect = 1e-11
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || || || || |||||| | || ||||| ||| |||
Sbjct 276246 CAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAGCCTTCAGAC 276187
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| || || ||||| || || || ||||| || || ||| ||
Sbjct 276186 ACTATTGAAAATGTGAAAGGCAAGATCCAGGATAAGGAAGGGATCCA-CCAGACCAGCAG 276128
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||| || || ||| |||| ||| ||||| | || || |||||||||| |
Sbjct 276127 CGTCTTATTTTTGCA--AAAACAGT-GGAGGATGGCCGTACCTTCTCCGATTACAATATT 276071
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||| |||||||||||||||||| | |||||
Sbjct 276070 CAAAAGGAGTCAACTCTTCACCTTGTTTTGCGTCTTCG 276033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181678434173242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |