Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq263 136 4e-27 seq463 132 4e-26 seq159 120 3e-22 seq47 116 3e-21 >seq263 Length=158529 Score = 136 bits (150), Expect = 4e-27 Identities = 174/235 (74%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| || | ||| | ||| | ||| ||||| |||||||||||||||||| || | Sbjct 64824 TCCACCTCGAAGCCTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTC-AC 64882 Query 35569 CAAGGTTCGCT--CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 |||| || || | || || ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 64883 TAAGGGTC-CTACCATCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGG 64941 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | | ||||||||| |||||| ||| | | || | | || || || | ||| Sbjct 64942 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCA 65001 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 ||||| | ||||| ||||| || ||||| ||||||||||| ||||||| ||||| Sbjct 65002 ACCTCAAGGGTGATAGTTTTCCCAGTCAATGTTTTCACAAAGATCTGCA-TCTGT 65055 >seq463 Length=112955 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||||||||||||||||||||| | || | | || || || || || || ||||| | Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||||||||||||| |||| || | | |||||||||| |||||| ||| | | | Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 58372 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || | ||||||||| | |||||| ||||||||||| | ||||| || | Sbjct 58371 CGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGA 58312 Query 35727 ATATCTGCATT 35737 | ||||||||| Sbjct 58311 AAATCTGCATT 58301 >seq159 Length=219009 Score = 120 bits (132), Expect = 3e-22 Identities = 143/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| ||| | |||||| | || || || ||||| || ||||| Sbjct 159440 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGCTTTCCAGCAAA 159381 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || |||||||| |||||| ||| | | | Sbjct 159380 GATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATT 159321 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT-TTTACCCGTCAAAGTTTTCA 35723 | | | ||||| | |||||||| | |||||||| ||| || |||||||| || | Sbjct 159320 TTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTTTCCAGTCAAAGTCTTGA 159261 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 159260 CAAAGATCTGCAT 159248 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| ||| | ||| || | || || || ||||| || ||||| Sbjct 157751 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAA 157692 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || |||||||| |||||| ||| | | | Sbjct 157691 GATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACATT 157632 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | |||||||| | |||||||| || || |||||||| || || Sbjct 157631 TTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTGAC 157572 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 157571 AAAGATCTGCAT 157560 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||| || || | | ||| || | || |||| || || || ||||| Sbjct 159210 TCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAG 159151 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | |||| || |||||||| |||||| ||| | | | Sbjct 159150 ATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 159091 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || | ||| ||||| | ||||| || || || ||||||||||| || Sbjct 159090 TCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACG 159031 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 159030 AAGATCTGCAT 159020 >seq47 Length=390960 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||| | | ||| || | || |||| ||| ||||| ||||| Sbjct 276742 CTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTACCAGCAAA 276801 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | ||||| ||| |||||| ||||| | | Sbjct 276802 AATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 276861 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||||||||| | ||||| || || || || | ||| || || Sbjct 276862 TTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276921 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 276922 AAAAATCTGCAT 276933 Score = 111 bits (122), Expect = 1e-19 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTT-ACCCGCAA 35603 ||||||||||||||||||||| | | ||| || | || |||| ||| || ||| |||| Sbjct 276286 CTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTACCAGCAA 276345 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | || | ||||||||||| | || | | ||||| ||| |||||| ||||| | Sbjct 276346 AAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACAT 276405 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || | ||||||||| | ||||| || || || || | ||| || | Sbjct 276406 TTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGA 276465 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 276466 CAAAAATCTGCAT 276478 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||| | | ||| || | || |||| |||||| || ||||| Sbjct 276515 CTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGACCATCCTCCAACTGCTTTCCAGCAAA 276574 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||| || |||||| ||| | | | Sbjct 276575 AATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTGACATT 276634 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||||||||| | ||||| || || || || | ||| || || Sbjct 276635 TTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276694 Query 35725 AAA 35727 ||| Sbjct 276695 AAA 276697 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||| | | ||| || | || |||| ||| || || ||||| Sbjct 277436 CTCCTTTTGAATGTTGTAATCAGAAAGGGTACGGCCATCCTCCAACTGTTTTCCAGCAAA 277495 Query 35605 TATCAACCGCTGCTG--GTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA 35662 || | |||||| | ||| | ||| | || ||||| ||| |||||| ||||| | Sbjct 277496 GATAAGACGCTGCCGGCGTCTGGTGGATCCCT-TCCTTATCCTGGATCTTGGCCTTCACA 277554 Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 || | | ||||| | |||||||| | ||||| || || || || | ||| || Sbjct 277555 TTTTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTG 277614 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 277615 ACAAAAATCTGCAT 277628 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||| |||||||||| ||||| || | || |||| ||| || ||||| Sbjct 276062 CTCCTTTTGAATATTGTAATCGGAGAAGGTACGGCCATCCTCCA-CTGTTT--TTGCAAA 276118 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || ||||| ||| |||||| |||| | | Sbjct 276119 AATAAGACGCTGCTGGTCTGGTGGATCCCT-TCCTTATCCTGGATCTTGCCTTTCACATT 276177 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | |||||||| | ||||| || || || || | ||| || || Sbjct 276178 TTCAATAGTGTCTGAAGGCTCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 276237 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 276238 AAAAATCTGCAT 276249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450740620482160