Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1326 138 2e-27 seq1672 114 2e-20 >seq1326 Length=48828 Score = 138 bits (152), Expect = 2e-27 Identities = 261/383 (68%), Gaps = 1/383 (0%) Strand=Plus/Minus Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 || ||||| || ||||| | |||||| || |||||||| |||||||||||||| |||| Sbjct 32970 TTGTTTCCACCTTGATCCACGTATCTTGCCGTGTTATTGTAGACTCTCAGCATAGGAACC 32911 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 | ||| || || | || || || ||| ||| || ||| |||| | || | Sbjct 32910 AAACCGTTGGAGATTCCGTTGGTACCACCAATGTACGACCCTGTTGCCCTGATGCAGTGA 32851 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 | | || || || || || || ||||||| || | || || | || | || ||| Sbjct 32850 ACATTGAGTCCGATGCCACCAGCGCTTTTAGAAATCAATGCGCACTGCTTAAGAGTATCA 32791 Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 69984 || || || || ||||| || || ||| ||||||| || || || | |||| | Sbjct 32790 TAAATTCCTTCAATGCTGTCTTCCTGCATTGTAAGAAGGAAGCAAGAGGAAAGTTGAGGT 32731 Query 69985 TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGC 70044 | |||| | ||||| || | || | ||||||||||||||||||| ||||| | Sbjct 32730 CTTGTAGTGGCAGCATTGAAAAGAGTCG-AGATGCGTGAGTGAACCATCGCTCAGACATT 32672 Query 70045 AGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGC 70104 | |||||| ||||||||||| | || || || | |||||| || || || || | | Sbjct 32671 AAATTGTAAGTTTCAATAGCCGCATCAATGTCATCATCATGAATCCCAATTGCAACTCTC 32612 Query 70105 ATCAACATATGCTGAGGTCGTTC 70127 || | ||| || || |||||||| Sbjct 32611 ATTAGCATGTGTTGTGGTCGTTC 32589 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| |||||||||||||| | || |||||||| || |||| ||| | || Sbjct 34366 TGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATGGAC 34307 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || |||| |||||| ||||| |||||||| ||||| || |||| | |||| | Sbjct 34306 TCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAAGAA 34247 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 |||| |||||| ||| | ||||| | ||||| | ||||||||| | ||| | | Sbjct 34246 TTTCGAAGACCGTGTTGACTTATTTTCTGTTTTAAACTGGACCAATCCCACAAATCGGTT 34187 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || || ||||| | ||| || || | ||| Sbjct 34186 GGAGTTACGTTCCACATATCATACTGCAAAAT 34155 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 70344 tttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTC 70403 ||| ||||||||||| || || || || | ||| || ||||| || ||||| ||||| || Sbjct 32200 TTTCTTTGTTTCCTTATGCAAGTTAGAAACGGCAATCCTGGCAGCAAGAATCGCATAATC 32141 Query 70404 AGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGT 70463 ||||| | |||||| ||||||| || | || ||||| || | || | ||| | ||| Sbjct 32140 CGGATGGTTTGTAGTTAAAGTAGCAGCAGTCTCAGCAGCCAAATTGTCAAGTTCCACAGT 32081 Query 70464 TGTAACTCC 70472 ||||||||| Sbjct 32080 TGTAACTCC 32072 >seq1672 Length=38749 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| || || || || || || |||||||| ||||| | ||||| ||||| Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 ||||||||||||||||| |||| ||||| || | ||| || || | |||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | |||| ||||| || || ||||||||| || ||||| || ||||| ||||| ||| Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070 Query 40057 AAAATATTTTTCATCGGG 40074 ||| | ||||||| || Sbjct 32069 AAATTTCCTTTCATCCGG 32052 Score = 104 bits (114), Expect = 3e-17 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 |||||| ||| || || || ||||| || |||||||| |||||||| || |||| ||| Sbjct 32576 TCGTTACTAAAGGTCAGGCCTGGCATAAGTCCACGCTTCTTGAGCCAGAAGATGGATGCA 32517 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 || |||||| || || || ||||| ||||||||||| |||| | || || | || Sbjct 32516 AAGCTTCCAGAGAAAAATATCCCTTCAACTGCTGCAAAAGCAATCACCCTTTCAGCAAAA 32457 Query 39779 CTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGC 39835 | | | | || | ||||| | | ||||| ||||| |||||||| || || ||| Sbjct 32456 GTAGAGTTCTTATCAGCAATCCAGGACAGAGCCCAGTCAGCCTTCTTCTTAACGCATGGC 32397 Query 39836 ATTGTTTCTATAGCATTAAAGAGATA 39861 || ||||| | ||||| || || || Sbjct 32396 ATGGTTTCAACGGCATTGAAAAGGTA 32371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686828071043280