Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq230 208 6e-49 seq30 131 1e-25 seq1672 87.8 1e-12 >seq230 Length=167959 Score = 208 bits (230), Expect = 6e-49 Identities = 355/511 (69%), Gaps = 14/511 (3%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||||||||| ||| || ||| || ||||||| | |||||||||| || | || Sbjct 50897 AATTGGAGGATTAGATAAGGAATTTAATGCAATCTTTAGAAGAGCATTTGCATCCAGAGT 50838 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 || | | || || | | || || ||||| || || ||| ||| || | || || Sbjct 50837 GTTCCCACCTGAGATCGTGGAGCAGTTAGGATGCAAGCACGTTAAAGGAATTCTACTATA 50778 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAA 19421 ||||||||| ||| ||||||||||||||| || | || || | ||| | || ||| Sbjct 50777 TGGGCCACCTGGTACTGGAAAAACATTAATGGCACGGCAAATTGGAAAAATGCT--CAAT 50720 Query 19422 ACAA--CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 ||| || |||||||| |||||||||||||| | | |||||||| || || || Sbjct 50719 GCAAAGGACCCGAAAATTGTCAATGGTCCTGAAATTCTGGACAAATATGTCGGCCAGTCA 50660 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539 || | ||| || || ||||||||||| || ||||||||| ||||| | | || | Sbjct 50659 GAGGCAAACGTCAGATTATTGTTTGCTGAAGCAGAAGAAGAAGAAAAAAGACTTGGTCCT 50600 Query 19540 AA--AAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG 19597 || || |||| || || ||||| | ||||| | || || || || ||||| |||| Sbjct 50599 AATTCAGGTCTT--CATATAATAATCTTTGATGAGATTGATGCCATTTGCAAGCAGAGAG 50542 Query 19598 GTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651 | | ||| | || ||| || ||||||||||| ||||| || || | || ||| Sbjct 50541 GAACAGTCGGTGGAGGAACTGGTGTGCATGACACTGTGGTCAACCAGCTTTTATCCAAAA 50482 Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711 | || || ||| | || || ||||| ||||| || ||||| ||||| || |||| ||| Sbjct 50481 TTGATGGAGTTGAACAGCTCAATAACATTTTGGTAATTGGAATGACAAACAGACGGGATA 50422 Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCG 19742 | || ||| || || || || || ||||| Sbjct 50421 TGATTGACGAAGCTTTGTTGCGTCCTGGTCG 50391 >seq30 Length=458414 Score = 131 bits (144), Expect = 1e-25 Identities = 271/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 40691 GTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATG 40750 |||||| ||||| || || ||| | ||||||||||| |||| || || || | || Sbjct 345553 GTTTCCATTGCTGACCACCAAACGTGTTTTTTGGAAAGGAATTGTGGAGGAGCTTCTGTG 345494 Query 40751 GTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAG----AGGAGTGCACATTT 40806 |||| | || || ||||| ||||| |||| | | ||||| |||||| ||||||| Sbjct 345493 GTTTGTGAAGGGATGTACAAATGC----AAATGAGCTGAAAGCTAAAGGAGTTCACATTT 345438 Query 40807 GGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAG 40866 || ||| || ||| | || || | || ||||| ||| |||| |||| Sbjct 345437 GGGATGGAAACTCTTCCAGGGAATTCCTGGACAAAATGGGATTCACTGATCGGGAGGAAG 345378 Query 40867 GTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTA 40926 |||| || || ||||| ||||| ||||| | ||| || ||||||||| | ||| | |||| Sbjct 345377 GTGACCTGGGACCTGTGTATGGCTTTCAATGGCGTCACTTTGGAGCAGAGTATAAGACTA 345318 Query 40927 TGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTA 40986 || | | | ||| ||||| | ||||| |||||| || || || | ||| | Sbjct 345317 TGAAAGATAACTATGAGGGACAAGGAGTTGATCAGTTACAGCAAGTAATTGACATGATCA 345258 Query 40987 AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATT 41046 || ||||| || |||||| || || || |||||||| || | || ||| Sbjct 345257 AAAATGATCCGTATTCCCGACGGATTATCATGACTGCGTGGAATCCTTCAGATCTACTCC 345198 Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT 41089 |||||||| ||||| ||||| | || |||||||| || Sbjct 345197 AAATGGCATTACCACCGTGTCACTGTCTAGCCCAGTTTTATGT 345155 >seq1672 Length=38749 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| ||||| || || || || ||||| |||||||| || ||||||||||| Sbjct 31814 AGAAAATCCTCGAAGGTTCGTTGTTTTCCCCATTCAGTATCATGATATCTGGCAAATGTA 31873 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 ||| || || |||| || |||||||| | |||||||| ||| Sbjct 31874 CAAGAAGGCCGAGGCTTCCTTTTGGACTGTGGAAGAAGTGGAT 31916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397410456759010