Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq230 208 6e-49
seq30 131 1e-25
seq1672 87.8 1e-12
>seq230
Length=167959
Score = 208 bits (230), Expect = 6e-49
Identities = 355/511 (69%), Gaps = 14/511 (3%)
Strand=Plus/Minus
Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301
|||||||||||| ||| || ||| || ||||||| | |||||||||| || | ||
Sbjct 50897 AATTGGAGGATTAGATAAGGAATTTAATGCAATCTTTAGAAGAGCATTTGCATCCAGAGT 50838
Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361
|| | | || || | | || || ||||| || || ||| ||| || | || ||
Sbjct 50837 GTTCCCACCTGAGATCGTGGAGCAGTTAGGATGCAAGCACGTTAAAGGAATTCTACTATA 50778
Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAA 19421
||||||||| ||| ||||||||||||||| || | || || | ||| | || |||
Sbjct 50777 TGGGCCACCTGGTACTGGAAAAACATTAATGGCACGGCAAATTGGAAAAATGCT--CAAT 50720
Query 19422 ACAA--CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479
||| || |||||||| |||||||||||||| | | |||||||| || || ||
Sbjct 50719 GCAAAGGACCCGAAAATTGTCAATGGTCCTGAAATTCTGGACAAATATGTCGGCCAGTCA 50660
Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGC 19539
|| | ||| || || ||||||||||| || ||||||||| ||||| | | || |
Sbjct 50659 GAGGCAAACGTCAGATTATTGTTTGCTGAAGCAGAAGAAGAAGAAAAAAGACTTGGTCCT 50600
Query 19540 AA--AAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG 19597
|| || |||| || || ||||| | ||||| | || || || || ||||| ||||
Sbjct 50599 AATTCAGGTCTT--CATATAATAATCTTTGATGAGATTGATGCCATTTGCAAGCAGAGAG 50542
Query 19598 GTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651
| | ||| | || ||| || ||||||||||| ||||| || || | || |||
Sbjct 50541 GAACAGTCGGTGGAGGAACTGGTGTGCATGACACTGTGGTCAACCAGCTTTTATCCAAAA 50482
Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711
| || || ||| | || || ||||| ||||| || ||||| ||||| || |||| |||
Sbjct 50481 TTGATGGAGTTGAACAGCTCAATAACATTTTGGTAATTGGAATGACAAACAGACGGGATA 50422
Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCG 19742
| || ||| || || || || || |||||
Sbjct 50421 TGATTGACGAAGCTTTGTTGCGTCCTGGTCG 50391
>seq30
Length=458414
Score = 131 bits (144), Expect = 1e-25
Identities = 271/403 (67%), Gaps = 8/403 (2%)
Strand=Plus/Minus
Query 40691 GTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATG 40750
|||||| ||||| || || ||| | ||||||||||| |||| || || || | ||
Sbjct 345553 GTTTCCATTGCTGACCACCAAACGTGTTTTTTGGAAAGGAATTGTGGAGGAGCTTCTGTG 345494
Query 40751 GTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAG----AGGAGTGCACATTT 40806
|||| | || || ||||| ||||| |||| | | ||||| |||||| |||||||
Sbjct 345493 GTTTGTGAAGGGATGTACAAATGC----AAATGAGCTGAAAGCTAAAGGAGTTCACATTT 345438
Query 40807 GGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAG 40866
|| ||| || ||| | || || | || ||||| ||| |||| ||||
Sbjct 345437 GGGATGGAAACTCTTCCAGGGAATTCCTGGACAAAATGGGATTCACTGATCGGGAGGAAG 345378
Query 40867 GTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTA 40926
|||| || || ||||| ||||| ||||| | ||| || ||||||||| | ||| | ||||
Sbjct 345377 GTGACCTGGGACCTGTGTATGGCTTTCAATGGCGTCACTTTGGAGCAGAGTATAAGACTA 345318
Query 40927 TGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTA 40986
|| | | | ||| ||||| | ||||| |||||| || || || | ||| |
Sbjct 345317 TGAAAGATAACTATGAGGGACAAGGAGTTGATCAGTTACAGCAAGTAATTGACATGATCA 345258
Query 40987 AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATT 41046
|| ||||| || |||||| || || || |||||||| || | || |||
Sbjct 345257 AAAATGATCCGTATTCCCGACGGATTATCATGACTGCGTGGAATCCTTCAGATCTACTCC 345198
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT 41089
|||||||| ||||| ||||| | || |||||||| ||
Sbjct 345197 AAATGGCATTACCACCGTGTCACTGTCTAGCCCAGTTTTATGT 345155
>seq1672
Length=38749
Score = 87.8 bits (96), Expect = 1e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743
||||||||| ||||| || || || || ||||| |||||||| || |||||||||||
Sbjct 31814 AGAAAATCCTCGAAGGTTCGTTGTTTTCCCCATTCAGTATCATGATATCTGGCAAATGTA 31873
Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786
||| || || |||| || |||||||| | |||||||| |||
Sbjct 31874 CAAGAAGGCCGAGGCTTCCTTTTGGACTGTGGAAGAAGTGGAT 31916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397410456759010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |