Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq263 129 5e-25 seq159 107 2e-18 seq1326 93.3 4e-14 seq47 84.2 2e-11 >seq263 Length=158529 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| ||||| || || |||||||| |||||||| || | | | | | ||||||||||| Sbjct 64848 ATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTG 64907 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||||||||| | || | ||||||||| || || || | ||||| || || |||||| Sbjct 64908 TTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTT 64967 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | |||| | ||| || ||| |||||| || || || |||| ||| || || Sbjct 64968 GGCCTTGACATTTTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGT 65027 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||||||||| ||||| Sbjct 65028 CAATGTTTTCACAAAGATCTGCAT 65051 >seq159 Length=219009 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| |||||||||||||| | | |||| | ||||| | ||| || || Sbjct 158988 GTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCA 158929 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||||||||| || || | || || ||||| |||||| || Sbjct 158928 GCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCCTTA 158869 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | | || || || ||||| || | |||||| || || || Sbjct 158868 ACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTC 158809 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| |||||||| Sbjct 158808 TTGACAAAAATTTGCAT 158792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| |||||||||||||| | | |||| | ||||| | ||| || || Sbjct 157528 GTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCA 157469 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| |||||||| || || | || || ||||| ||||| ||| Sbjct 157468 GCAAAGATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTC 157409 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||| | | || || || || || || | ||||| || || || Sbjct 157408 ACATTTTCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGTGTC 157349 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 157348 TTCACGAAAATCTGCAT 157332 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| |||||||||||||| | | | || | || || || || || || Sbjct 158760 GTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACCATCCTCAAGTTGCTTTCCA 158701 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| ||||| || || | ||| || ||||| |||||| || Sbjct 158700 GCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTTGCCTTG 158641 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| ||| || |||| ||| || | || || |||| || Sbjct 158640 ACATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGATGGTCTTTCCAGTCAACGTC 158581 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 158580 TTGACGAAGATCTGCATA 158563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||||||||| || ||||| || |||| || ||||||| | ||| || || Sbjct 158211 GTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGC-CGTCTTCCAACTGCTTTCC 158153 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||||||||| ||||| || || | ||| || ||||| ||||| || Sbjct 158152 AGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTAGCCTT 158093 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | |||| | ||||| | || || ||||| | || || | || || || || || Sbjct 158092 AACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCTGTAAGGGT 158033 Query 27230 TTTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 158032 CTTGACAAAGATCTGCATA 158014 >seq1326 Length=48828 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131597 AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTC 131656 |||| ||| |||| | |||||||| || |||| | ||||| ||| |||| |||| Sbjct 33281 AAATCAGGAGATTCTTTAGGACACATCAGACACCAGTCACCGTTGCTTTCGACTCTCTTC 33222 Query 131657 ATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTA 131716 || || ||||| || | ||| | || | |||| ||| || || ||||||||| | Sbjct 33221 ATGAATAAATCGGGAATCCACATGGCAAAAAACAAATCCCTTGCACGATTCTCTTCTTTC 33162 Query 131717 CCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATAC 131776 || | |||| ||||| | ||||| || || | || |||||||| |||||||||||| Sbjct 33161 CCAGTGTTTTTCTTCAAGTCCAAAAATTCAAAGACATCTGCATGCCACGGTTCCAAATAC 33102 Query 131777 ACTGCCATTGCGCC 131790 | || | ||||| Sbjct 33101 ATAGCGAACGCGCC 33088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 131270 TTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTT-ACAAATTGATTTACACATAT 131328 |||||||| | ||||||| | |||| | || |||||| ||| | ||| ||| || Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGA---TC-AGGTTTCACATACATATTCACAGCAAT 33638 Query 131329 TGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCA 131388 || |||| ||| || || || |||| || | |||||| || ||||| | ||| Sbjct 33637 AGATGCCAAATTGCACACGGCTATTTCATCCTTTGAAGAATACTCGACTATTTCAGTGCA 33578 Query 131389 CAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-T 131447 |||||| | || ||||| || | ||| || |||||| ||| ||| ||| | | Sbjct 33577 CAAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATT-ACACGCAT 33519 Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGT 131498 ||||||||| || ||| || || || ||||||| ||| | ||||||||||| Sbjct 33518 CCTTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAATGT 33468 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882 || |||| ||||| || | || ||| || |||||||||||| | |||| ||||| | Sbjct 32942 CCGTGTTATTGTAGACTCTCAGCATAGGAACCAAACCGTTGGAGATTCCGTTGGTACCAC 32883 Query 131883 TAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATT 131942 |||||| || | || ||||| |||||| |||||||| || || || || || Sbjct 32882 CAATGTACGACCCTGTTGCCCTGATGCAGTGAACATTGAGTCCGATGCCACCAGCGCTTT 32823 Query 131943 TAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 |||| || | |||||| | | ||||| | ||| || ||||| | |||||| Sbjct 32822 TAGAAATCAATGCGCACTGCTTAAGAGTATCATAAATTCCTTCAATGCTGTC 32771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 131042 CTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCT 131101 ||||||||||| |||||||| || | ||||||| ||||| | ||||||| || || Sbjct 34002 CTAGCTTCCAACGCTCCGTAGTACAAGGTTTCGAATATTTGAATGTTTAATTTCTTTGCC 33943 Query 131102 TGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCA 131161 | ||| || | |||||| |||| ||||||||||| || ||||| || || || ||| Sbjct 33942 TCAGGGCTTTCAAACGGAAATCTCATCAAAATAAAAGCATCAGCGAGTCCTTGAATACCA 33883 Query 131162 A 131162 | Sbjct 33882 A 33882 >seq47 Length=390960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 27016 TATTGCCT-CCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAG 27074 ||||||| || || | ||||| || | || | || || || |||||||||||||| Sbjct 276021 TATTGCCCACCACGAAGACGCAAAACAAGGTGAAGAGTTGACTCCTTTTGAATATTGTAA 276080 Query 27075 TCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCC 27134 ||| | | | || | || || | |||||| || |||| |||||||| || || Sbjct 276081 TCGGAGAAGGTACGGCCATCCTCCA-CTGTTT--TTGCAAAAATAAGACGCTGCTGGTCT 276137 Query 27135 GGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCT 27194 || || | || || ||||| ||||||| ||||| |||| | |||||||| | Sbjct 276138 GGTGG-ATCCCTTCCTTATCCTGGATCTTGCCTTTCACATTTTCAATAGTGTCTGAAGGC 276196 Query 27195 TCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| || | ||||| || ||||| || ||||| || |||||| Sbjct 276197 TCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCATA 276250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424885708095024