Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq263 129 5e-25
seq159 107 2e-18
seq1326 93.3 4e-14
seq47 84.2 2e-11
>seq263
Length=158529
Score = 129 bits (142), Expect = 5e-25
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103
||| ||||| || || |||||||| |||||||| || | | | | | |||||||||||
Sbjct 64848 ATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTG 64907
Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163
||||||||| | || | ||||||||| || || || | ||||| || || ||||||
Sbjct 64908 TTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTT 64967
Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
| || | |||| | ||| || ||| |||||| || || || |||| ||| || ||
Sbjct 64968 GGCCTTGACATTTTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGT 65027
Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247
|| |||||||||||||| |||||
Sbjct 65028 CAATGTTTTCACAAAGATCTGCAT 65051
>seq159
Length=219009
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || ||||| |||||||||||||| | | |||| | ||||| | ||| || ||
Sbjct 158988 GTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCA 158929
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||||||||||||||| || || | || || ||||| |||||| ||
Sbjct 158928 GCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCCTTA 158869
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| |||| | ||||| | | || || || ||||| || | |||||| || || ||
Sbjct 158868 ACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTAAGGGTC 158809
Query 27231 TTCACAAAGATTTGCAT 27247
|| ||||| ||||||||
Sbjct 158808 TTGACAAAAATTTGCAT 158792
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || ||||| |||||||||||||| | | |||| | ||||| | ||| || ||
Sbjct 157528 GTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCTTCCAACTGCTTTCCA 157469
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | |||||||| |||||||| || || | || || ||||| ||||| |||
Sbjct 157468 GCAAAGATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTTGCCTTC 157409
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| |||| | |||||| | | || || || || || || | ||||| || || ||
Sbjct 157408 ACATTTTCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCAGTGAGTGTC 157349
Query 27231 TTCACAAAGATTTGCAT 27247
||||| || || |||||
Sbjct 157348 TTCACGAAAATCTGCAT 157332
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || |||||||| |||||||||||||| | | | || | || || || || || ||
Sbjct 158760 GTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACCATCCTCAAGTTGCTTTCCA 158701
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||||||||| ||||| || || | ||| || ||||| |||||| ||
Sbjct 158700 GCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTTGCCTTG 158641
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| ||| ||| || |||| ||| || | || || |||| ||
Sbjct 158640 ACATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGATGGTCTTTCCAGTCAACGTC 158581
Query 27231 TTCACAAAGATTTGCATA 27248
|| || ||||| ||||||
Sbjct 158580 TTGACGAAGATCTGCATA 158563
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
|| || ||||||||||| || ||||| || |||| || ||||||| | ||| || ||
Sbjct 158211 GTGGATTCTTTTTGAATGTTATAGTCTGACAATGTTCGGC-CGTCTTCCAACTGCTTTCC 158153
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|| | ||||||||||| ||||| || || | ||| || ||||| ||||| ||
Sbjct 158152 AGCAAAGATGAGACGCTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTAGCCTT 158093
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| |||| | ||||| | || || ||||| | || || | || || || || ||
Sbjct 158092 AACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAATGTGATGGTCTTTCCTGTAAGGGT 158033
Query 27230 TTTCACAAAGATTTGCATA 27248
|| |||||||| ||||||
Sbjct 158032 CTTGACAAAGATCTGCATA 158014
>seq1326
Length=48828
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131597 AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTC 131656
|||| ||| |||| | |||||||| || |||| | ||||| ||| |||| ||||
Sbjct 33281 AAATCAGGAGATTCTTTAGGACACATCAGACACCAGTCACCGTTGCTTTCGACTCTCTTC 33222
Query 131657 ATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTA 131716
|| || ||||| || | ||| | || | |||| ||| || || ||||||||| |
Sbjct 33221 ATGAATAAATCGGGAATCCACATGGCAAAAAACAAATCCCTTGCACGATTCTCTTCTTTC 33162
Query 131717 CCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATAC 131776
|| | |||| ||||| | ||||| || || | || |||||||| ||||||||||||
Sbjct 33161 CCAGTGTTTTTCTTCAAGTCCAAAAATTCAAAGACATCTGCATGCCACGGTTCCAAATAC 33102
Query 131777 ACTGCCATTGCGCC 131790
| || | |||||
Sbjct 33101 ATAGCGAACGCGCC 33088
Score = 89.7 bits (98), Expect = 4e-13
Identities = 162/231 (70%), Gaps = 7/231 (3%)
Strand=Plus/Minus
Query 131270 TTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTT-ACAAATTGATTTACACATAT 131328
|||||||| | ||||||| | |||| | || |||||| ||| | ||| ||| ||
Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGA---TC-AGGTTTCACATACATATTCACAGCAAT 33638
Query 131329 TGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCA 131388
|| |||| ||| || || || |||| || | |||||| || ||||| | |||
Sbjct 33637 AGATGCCAAATTGCACACGGCTATTTCATCCTTTGAAGAATACTCGACTATTTCAGTGCA 33578
Query 131389 CAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-T 131447
|||||| | || ||||| || | ||| || |||||| ||| ||| ||| | |
Sbjct 33577 CAAATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATT-ACACGCAT 33519
Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGT 131498
||||||||| || ||| || || || ||||||| ||| | |||||||||||
Sbjct 33518 CCTTGTACAACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAATGT 33468
Score = 86.0 bits (94), Expect = 5e-12
Identities = 122/172 (71%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882
|| |||| ||||| || | || ||| || |||||||||||| | |||| ||||| |
Sbjct 32942 CCGTGTTATTGTAGACTCTCAGCATAGGAACCAAACCGTTGGAGATTCCGTTGGTACCAC 32883
Query 131883 TAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATT 131942
|||||| || | || ||||| |||||| |||||||| || || || || ||
Sbjct 32882 CAATGTACGACCCTGTTGCCCTGATGCAGTGAACATTGAGTCCGATGCCACCAGCGCTTT 32823
Query 131943 TAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994
|||| || | |||||| | | ||||| | ||| || ||||| | ||||||
Sbjct 32822 TAGAAATCAATGCGCACTGCTTAAGAGTATCATAAATTCCTTCAATGCTGTC 32771
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 131042 CTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCT 131101
||||||||||| |||||||| || | ||||||| ||||| | ||||||| || ||
Sbjct 34002 CTAGCTTCCAACGCTCCGTAGTACAAGGTTTCGAATATTTGAATGTTTAATTTCTTTGCC 33943
Query 131102 TGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCA 131161
| ||| || | |||||| |||| ||||||||||| || ||||| || || || |||
Sbjct 33942 TCAGGGCTTTCAAACGGAAATCTCATCAAAATAAAAGCATCAGCGAGTCCTTGAATACCA 33883
Query 131162 A 131162
|
Sbjct 33882 A 33882
>seq47
Length=390960
Score = 84.2 bits (92), Expect = 2e-11
Identities = 162/234 (69%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 27016 TATTGCCT-CCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAG 27074
||||||| || || | ||||| || | || | || || || ||||||||||||||
Sbjct 276021 TATTGCCCACCACGAAGACGCAAAACAAGGTGAAGAGTTGACTCCTTTTGAATATTGTAA 276080
Query 27075 TCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCC 27134
||| | | | || | || || | |||||| || |||| |||||||| || ||
Sbjct 276081 TCGGAGAAGGTACGGCCATCCTCCA-CTGTTT--TTGCAAAAATAAGACGCTGCTGGTCT 276137
Query 27135 GGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCT 27194
|| || | || || ||||| ||||||| ||||| |||| | |||||||| |
Sbjct 276138 GGTGG-ATCCCTTCCTTATCCTGGATCTTGCCTTTCACATTTTCAATAGTGTCTGAAGGC 276196
Query 27195 TCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || ||||| || | ||||| || ||||| || ||||| || ||||||
Sbjct 276197 TCCACCTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCATA 276250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424885708095024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |