Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq263 114 8e-21
seq463 104 1e-17
seq159 96.9 2e-15
seq47 87.8 1e-12
>seq263
Length=158529
Score = 114 bits (126), Expect = 8e-21
Identities = 146/199 (73%), Gaps = 14/199 (7%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
||||||||||||||| || || ||| || | | ||||| || ||||||||||||||
Sbjct 64860 CTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAA 64919
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT----TTG---TT 34627
|| |||||||||||||| || || | ||||||||||||| |||||| ||| ||
Sbjct 64920 GATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 64979
Query 34628 TTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACG 34687
|| ||||| || || | || || || | ||| || ||||| || || || |
Sbjct 64980 TT--CGATA-----GTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGTCAATG 65032
Query 34688 TTTTCACAAAAATCTGCAT 34706
|||||||||| ||||||||
Sbjct 65033 TTTTCACAAAGATCTGCAT 65051
>seq463
Length=112955
Score = 104 bits (114), Expect = 1e-17
Identities = 141/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||||||||| ||||| || ||||| | | || || |||||||| |||||||| |
Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636
| || ||||| || ||||| || | |||||||||||| |||||| | || || |
Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTG-GCCTTGACATTC 58373
Query 34637 AA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695
|| ||||| | ||||| || | || || |||||||| || | ||||| ||
Sbjct 58372 TCGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACG 58313
Query 34696 AAAATCTGCATGTT 34709
||||||||||| ||
Sbjct 58312 AAAATCTGCATTTT 58299
>seq159
Length=219009
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| |||| ||||| | || | ||| || ||| || || ||||||||||| |||||
Sbjct 159247 GCCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGA 159188
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || || | ||||| | |||||| || ||||| || | |||||| ||||| || ||
Sbjct 159187 AAGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 159128
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| || ||||||||| |||| || | || || | || ||||| | || |
Sbjct 159127 AATGCCTTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTA 159069
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
| || | ||| || || || || || || ||||| || || |||||||||
Sbjct 159068 CCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCATG 159019
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | || | ||| || ||| || |||||||||||||| |||||
Sbjct 158241 CCACCACGAAGACGAAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGAC 158182
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||||| ||||||| | || || || ||||| || | |||||| || || || ||
Sbjct 158181 AATGTTCGGCCGTCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGG 158122
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||| ||| ||| || | ||||| | || ||||| | ||||||
Sbjct 158121 ATACCTTCCTTATCT-TGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCAC 158063
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || || || || || || | || || ||||| ||||||||
Sbjct 158062 TTCCAATGTGATGGTCTTTCCTGTAAGGGTCTTGACAAAGATCTGCAT 158015
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||| | || | ||| || ||| |||||| || || || || ||
Sbjct 159703 CCACCTCGAAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGCTG 159644
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || |||||||| || || ||||| || |||||||||||||| || ||
Sbjct 159643 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGG 159584
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658
| ||| ||||||||| ||| || | |||||| | || ||||| | |||||
Sbjct 159583 ATTCCTTCCTTGTCT-TGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCAC 159525
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | ||| || || || ||||||||
Sbjct 159524 CTCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACGAAGATCTGCAT 159477
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/228 (70%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| ||||| | || | ||| || ||| |||||| || ||||| || ||
Sbjct 158013 CCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 157954
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || |||||||| || || ||||| || |||||||||| ||| || ||
Sbjct 157953 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTT-GTCTGGGGGA 157895
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658
| ||| ||||| ||| ||| || | |||||| | || ||||| | |||||
Sbjct 157894 ATTCCTTCCTTATCT-TGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCAC 157836
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| || || || || || || | ||| || ||||| ||||||||
Sbjct 157835 CTCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACAAAGATCTGCAT 157788
>seq47
Length=390960
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||| | || | ||| || || ||||||||||||||| ||||| |||
Sbjct 276480 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 276539
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || | || || || ||||| || | |||||| ||||| || ||
Sbjct 276540 AGGGTGCGACCATCCTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGG 276599
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||| ||| ||||||
Sbjct 276600 ATTCCCTCCTTATCTTGGATCTT 276622
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || | ||| || || ||||||||||||||| ||||| ||||| || ||
Sbjct 276716 AGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGG 276775
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || | |||||||| ||||| || | |||||| ||||| || || | || |||
Sbjct 276776 CCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCC 276835
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668
|| || |||||| || | | ||| ||||| | ||||| || | ||
Sbjct 276836 TTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTG 276895
Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || || ||||||||||||||
Sbjct 276896 ATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/228 (68%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||| | || | ||| || || ||||||||||||||| ||||| |||
Sbjct 276251 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 276310
Query 34540 AGTGTTCGCTCGT-CTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || | | || ||| | |||||| ||||| || | |||||| ||||| || ||
Sbjct 276311 AGGGTACGGCCATCCTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGG 276370
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658
| || ||||| || |||||| || | | ||| ||||| | |||||
Sbjct 276371 GATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCAC 276430
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || || || || || | || || ||||||||||||||
Sbjct 276431 CTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314693536118666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |