Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq263 114 8e-21 seq463 104 1e-17 seq159 96.9 2e-15 seq47 87.8 1e-12 >seq263 Length=158529 Score = 114 bits (126), Expect = 8e-21 Identities = 146/199 (73%), Gaps = 14/199 (7%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||||||||| || || ||| || | | ||||| || |||||||||||||| Sbjct 64860 CTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTCGAGCTGTTTACCGGCAAA 64919 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT----TTG---TT 34627 || |||||||||||||| || || | ||||||||||||| |||||| ||| || Sbjct 64920 GATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 64979 Query 34628 TTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACG 34687 || ||||| || || | || || || | ||| || ||||| || || || | Sbjct 64980 TT--CGATA-----GTATCACTGGGTTCAACCTCAAGGGTGATAGTTTTCCCAGTCAATG 65032 Query 34688 TTTTCACAAAAATCTGCAT 34706 |||||||||| |||||||| Sbjct 65033 TTTTCACAAAGATCTGCAT 65051 >seq463 Length=112955 Score = 104 bits (114), Expect = 1e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||||||||| ||||| || ||||| | | || || |||||||| |||||||| | Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636 | || ||||| || ||||| || | |||||||||||| |||||| | || || | Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTG-GCCTTGACATTC 58373 Query 34637 AA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 || ||||| | ||||| || | || || |||||||| || | ||||| || Sbjct 58372 TCGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACG 58313 Query 34696 AAAATCTGCATGTT 34709 ||||||||||| || Sbjct 58312 AAAATCTGCATTTT 58299 >seq159 Length=219009 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||| | || | ||| || ||| || || ||||||||||| ||||| Sbjct 159247 GCCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGA 159188 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | |||||| || ||||| || | |||||| ||||| || || Sbjct 159187 AAGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 159128 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| |||| || | || || | || ||||| | || | Sbjct 159127 AATGCCTTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTA 159069 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || || || || ||||| || || ||||||||| Sbjct 159068 CCTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCATG 159019 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| || ||| || |||||||||||||| ||||| Sbjct 158241 CCACCACGAAGACGAAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGAC 158182 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| ||||||| | || || || ||||| || | |||||| || || || || Sbjct 158181 AATGTTCGGCCGTCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGG 158122 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| || | ||||| | || ||||| | |||||| Sbjct 158121 ATACCTTCCTTATCT-TGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCAC 158063 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || ||||| |||||||| Sbjct 158062 TTCCAATGTGATGGTCTTTCCTGTAAGGGTCTTGACAAAGATCTGCAT 158015 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||| | || | ||| || ||| |||||| || || || || || Sbjct 159703 CCACCTCGAAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGCTG 159644 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| || || ||||| || |||||||||||||| || || Sbjct 159643 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGG 159584 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| || | |||||| | || ||||| | ||||| Sbjct 159583 ATTCCTTCCTTGTCT-TGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCAC 159525 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | ||| || || || |||||||| Sbjct 159524 CTCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACGAAGATCTGCAT 159477 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | ||| || ||| |||||| || ||||| || || Sbjct 158013 CCACCTCTGAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 157954 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| || || ||||| || |||||||||| ||| || || Sbjct 157953 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTT-GTCTGGGGGA 157895 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| ||| || | |||||| | || ||||| | ||||| Sbjct 157894 ATTCCTTCCTTATCT-TGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCAC 157836 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | ||| || ||||| |||||||| Sbjct 157835 CTCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACAAAGATCTGCAT 157788 >seq47 Length=390960 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | ||| || || ||||||||||||||| ||||| ||| Sbjct 276480 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 276539 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | || || || ||||| || | |||||| ||||| || || Sbjct 276540 AGGGTGCGACCATCCTCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGG 276599 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||| ||| |||||| Sbjct 276600 ATTCCCTCCTTATCTTGGATCTT 276622 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| || || ||||||||||||||| ||||| ||||| || || Sbjct 276716 AGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGG 276775 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | |||||||| ||||| || | |||||| ||||| || || | || ||| Sbjct 276776 CCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCTTCC 276835 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || || |||||| || | | ||| ||||| | ||||| || | || Sbjct 276836 TTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTG 276895 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || |||||||||||||| Sbjct 276896 ATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | ||| || || ||||||||||||||| ||||| ||| Sbjct 276251 CCACCTCGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAA 276310 Query 34540 AGTGTTCGCTCGT-CTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | | || ||| | |||||| ||||| || | |||||| ||||| || || Sbjct 276311 AGGGTACGGCCATCCTCCAACTGTTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGG 276370 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || |||||| || | | ||| ||||| | ||||| Sbjct 276371 GATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCAC 276430 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || | || || |||||||||||||| Sbjct 276431 CTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314693536118666