Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq463 118 7e-22 seq159 107 1e-18 seq263 105 5e-18 seq47 89.7 3e-13 >seq463 Length=112955 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||||||||||||||||||||| ||||| ||||| || || || || || Sbjct 58299 AAAATGCAGATTTTCGTTAAAACCCTCACGGGTAAAACCATCACGCTTGAGGTGGAACCC 58358 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | || || || Sbjct 58359 AGTGACACGATCGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGAATCCCCCCGGA 58417 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| || || |||||||| |||||||| || || | | | || | |||||| Sbjct 58418 TCAGCAGCGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGAAGGACACTCTCCGATTA 58477 Query 23787 CAACATACAAAA 23798 |||||| ||||| Sbjct 58478 CAACATTCAAAA 58489 >seq159 Length=219009 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || || |||||||| || || || || | | Sbjct 157332 ATGCAGATTTTCGTGAAGACACTCACTGGCAAGACGATCACCCTTGAGGTGGAGCCTTCT 157391 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || ||| ||| || || ||||| | || ||||||||| Sbjct 157392 GACACTATCGAAAATGTGAAGGCAAAGATTCAAGATAAGGAAGGCATTCCCCCAGATCAA 157451 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || || ||||||| | ||||| | |||| ||||| Sbjct 157452 CAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACAAT 157511 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || ||||| || || ||| | ||| Sbjct 157512 ATCCAAAAGGAATCTACACTCCAT 157535 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || ||||| || || ||||| |||||||| || || || | | Sbjct 158791 AATGCAAATTTTTGTCAAGACCCTTACTGGCAAAACCATCACTCTTGAGGTGGAGCCTTC 158850 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | |||| | |||| | || | || || || ||||| | || ||||||| Sbjct 158851 CGACACCATCGAAAATGTTAAGGCCAAGA-TTCAAGATAAGGAAGGCATTCCCCCAGATC 158909 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| | || ||||| || || || ||||||| | ||||| | |||| |||| Sbjct 158910 AACAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTCAGCGACTACA 158969 Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814 | || ||||| || || ||| | ||| Sbjct 158970 ATATCCAAAAGGAATCTACACTCCAT 158995 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || ||||| || ||||| | || || || || | Sbjct 159477 ATGCAGATCTTCGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 159536 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || ||| ||||| ||||| | || ||||| ||| Sbjct 159537 GACACTATCGAAAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCCCCAGACCAA 159596 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || || ||||| || || | || || | |||| ||||| Sbjct 159597 CAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAAT 159656 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 159657 ATCCAGAAGGAGTCCAC 159673 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || || || ||||| || ||||| | || || || || | Sbjct 157788 ATGCAGATCTTTGTTAAGACGCTTACAGGAAAGACTATCACATTGGAGGTGGAACCCTCT 157847 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || ||| || || ||||| | || ||||| ||| Sbjct 157848 GACACTATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGA-CAA 157906 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || || ||||| || || | || || | |||| |||||| Sbjct 157907 CAGCGTTTGATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACCCTCAGCGACTACAAC 157966 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 157967 ATCCAGAAGGAGTCCAC 157983 >seq263 Length=158529 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| ||||| || || ||||| ||| Sbjct 65051 ATGCAGATCTTTGTGAAAACATTGACTGGGAAAACTATCACCCTTGAGGTTGAACCCAGT 64992 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | || || || ||||| || || | || ||||| ||| Sbjct 64991 GATACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAA 64932 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || |||||||| ||||| || ||||| | | || | | || |||||| Sbjct 64931 CAGCGTTTGATCTTTGCCGGTAAACAGCTCGAAGATGGTAGGACCCTTAGTGACTACAAC 64872 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || || ||| | || | ||| | ||||| ||| Sbjct 64871 ATTCAAAAGGAGTCAACGTTGCATCTTGTGCTCAGGCTTCGAGGTGGA 64824 >seq47 Length=390960 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || ||||||||||| || || ||| Sbjct 276933 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGT 276874 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || || || ||||| | || ||||| || Sbjct 276873 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 276814 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || ||||| |||| || | || || | ||||||||| Sbjct 276813 CAGCGTCTTATTTTTGCTGGTAAACAGTTGGAGGATGGCCGTACCCTTTCTGATTACAAC 276754 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 276753 ATTCAAAAGGAGTCTAC 276737 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || ||||||||||| || || ||| Sbjct 276478 ATGCAGATTTTTGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAGGTGGAACCCAGT 276419 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || || || ||||| | || ||||| || Sbjct 276418 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 276359 Query 23731 CAGCGTTTAATATTTGCCGG-CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || ||||| |||| || | || || | |||||||| Sbjct 276358 CAGCGTCTTATTTTTGCTGGTAAAACAGTTGGAGGATGGCCGTACCCTTTCTGATTACAA 276299 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 276298 CATTCAAAAGGAGTCTAC 276281 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || || || ||||||||||| || || | | Sbjct 277854 ATGCAAATTTTCGTGAAGACACTCACTGGCAAGACCATCACTCTCGAGGTGGAGCCTTCC 277795 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || || || || || ||||| | || ||||| || Sbjct 277794 GACACTATTGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAG 277735 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||| | | ||||| ||| ||| | || || | ||||||||| Sbjct 277734 CAGCGTCTTATCTTTG-CTGAAAACAGTTGG-AGATGGCCGTACGCTTTCTGATTACAAC 277677 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 277676 ATTCAAAAGGAGTCTAC 277660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337970868536216