Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq159 158 3e-33
seq47 122 2e-22
seq263 111 4e-19
seq11 86.0 1e-11
>seq159
Length=219009
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| || ||||| ||||||| |||||| ||| | || | ||||||
Sbjct 157543 AGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCT 157484
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| ||||| || |||||||| || || ||||| |||||||| |||
Sbjct 157483 TCCAACTGCTTTCCAGCAAAGATGAGACGTTGTTGATCTGGGGGAATGCCTTCCTTATCT 157424
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| |||||| ||||||| |||||| ||||| || | ||||| || | |||||||||
Sbjct 157423 TGAATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTC 157364
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 157363 TTGCCAGTGAGTGTCTTCACGAAAATCTGCAT 157332
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || |||||||||||||||| |||||| ||| | || | |||||
Sbjct 158775 AGGACGAGATGAAGGGTGGATTCTTTTTGGATATTGTAGTCGCTGAGGGTACGACCATCC 158716
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| ||||| || || || || || || |||||||||||||| |||
Sbjct 158715 TCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCT 158656
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||||||| ||| ||| ||||| ||||| || |||||| ||||| ||||| |||
Sbjct 158655 TGGATCTTTGCCTTGACATTCTCGATCGTGTCACTGGGTTCCACCTCTAAAGTGATGGTC 158596
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | ||| | |||||
Sbjct 158595 TTTCCAGTCAACGTCTTGACGAAGATCTGCAT 158564
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||||| || ||||| ||||| || || | ||||||||| | | |||
Sbjct 159926 ACGAAGACGAAGGACAAGATGCAGAGTCGATTCCTTCTGAATATTGTAATCAGAGAGAGT 159867
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | ||| || ||||| || ||||| || |||||||| || ||||||||
Sbjct 159866 ACGTCCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGTTGGTCTGGGGGAATACC 159807
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| ||||||||||| ||| ||| ||||| ||||| || ||| || || ||
Sbjct 159806 TTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCGCTGGGTTCTACCTCCAA 159747
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || |||||||| || | ||| | |||||
Sbjct 159746 AGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 159705
Score = 145 bits (160), Expect = 2e-29
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| || || || |||||||||||||| | || || || | ||| ||
Sbjct 158236 ACGAAGACGAAGGACGAGATGAAGGGTGGATTCTTTTTGAATGTTATAGTCTGACAATGT 158177
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| || ||||| | |||||| ||||| ||||| || || || || || || || |||||
Sbjct 158176 TCGGCCGTCTTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGATCTGGGGGGATACC 158117
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| ||||| ||||| ||| ||| |||||||||||| |||| ||||| || ||
Sbjct 158116 TTCCTTATCTTGAATCTTAGCCTTAACATTTTCGATGGTGTCAGAGGGCTCCACTTCCAA 158057
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| ||||| || ||
Sbjct 158056 TGTGATGGTCTTTCCTGT 158039
Score = 143 bits (158), Expect = 6e-29
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || |||||||| || ||||||| ||||| ||| | || | |||||
Sbjct 157771 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTACGGCCATCC 157712
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| ||||| | || || ||||| || ||||| ||||||||||||
Sbjct 157711 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 157652
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||| |||||||| || | ||||| || | |||||||||
Sbjct 157651 TGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTC 157592
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||||||| ||
Sbjct 157591 TTTCCAGTCAAAGTCTT 157575
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||||||||||| || | || || || | | || | ||||||
Sbjct 159231 AGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGAAAGGGTACGTCCATCT 159172
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | || || ||||| |||||||| || || ||||| || ||||| ||||||||||||
Sbjct 159171 TCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 159112
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||| ||||| || ||| || ||||| ||||| |||
Sbjct 159111 TGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTACCTCTAAGGTGATGGTC 159052
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||||||||| | ||| | |||||
Sbjct 159051 TTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 159020
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| || ||||| ||||||| |||||| ||| | || | ||||||
Sbjct 159003 AGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCTGAGGGTGCGACCATCT 158944
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| ||||| || || ||||| || || ||||| |||||||| |||
Sbjct 158943 TCCAACTGCTTTCCAGCAAAGATGAGACGCTGTTGATCTGGGGGAATGCCTTCCTTATCT 158884
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| |||||||||||| || | ||||| || | ||||| ||
Sbjct 158883 TGAATCTTGGCCTTAACATTTTCGATGGTGTCGGAAGGCTCCACCTCAAGAGTGATGGTT 158824
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || | || || | || | |||||||
Sbjct 158823 TTGCCAGTAAGGGTCTTGACAAAAATTTGCATT 158791
Score = 141 bits (156), Expect = 2e-28
Identities = 151/198 (76%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || |||||||| || ||||||| ||||| ||| | |||| |||||
Sbjct 159460 AGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTTCGGCCATCC 159401
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| ||||| | || || ||||| || ||||| ||||||||||||
Sbjct 159400 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCT 159341
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||| |||||||| || | ||||| || | |||||||||
Sbjct 159340 TGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCCACCTCAAGGGTGATCGTC 159281
Query 225682 -TTGCCCGTCAAAGTTTT 225698
|| || |||||||| ||
Sbjct 159280 TTTTCCAGTCAAAGTCTT 159263
Score = 132 bits (146), Expect = 1e-25
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||||| || || || ||||| || || |||| |||||| ||| | ||
Sbjct 159697 CGAAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGCTGAGGGTA 159638
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || ||||| ||||| ||||| | || |||||||| || || || |||
Sbjct 159637 CGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCT 159578
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||| ||||| ||| || |||||| ||||| |||| |||||| || ||
Sbjct 159577 TCCTTGTCTTGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCACCTCCAAT 159518
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | || || | ||| | |||||
Sbjct 159517 GTGATAGTCTTTCCTGTAAGCGTCTTAACGAAGATCTGCAT 159477
Score = 111 bits (122), Expect = 4e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||||| || || |||| |||||| || | || |||| || |||
Sbjct 158547 AGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCCGACAGTGTTCGGCCGTCT 158488
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | || || ||||| ||||| || || || || || || ||||||||||||||||||
Sbjct 158487 TCCAATTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCT 158428
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCAC 225665
|| || ||| ||| ||| |||||| ||||| || | ||| ||
Sbjct 158427 TGAATTTTTGCCTTGACATTTTCGATCGTGTCAGATGGTTCAAC 158384
>seq47
Length=390960
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || || || || || ||||| | |||||||| | | || | |||||
Sbjct 276495 AGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGACCATCC 276554
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||| || ||||| || || ||||| || || || || ||||| |||
Sbjct 276555 TCCAACTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTATCT 276614
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||| |||||||| || |||||| || | ||||| |||
Sbjct 276615 TGGATCTTAGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGTGATGGTC 276674
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| || | ||| ||
Sbjct 276675 TTGCCAGTAAGAGTCTT 276691
Score = 116 bits (128), Expect = 9e-21
Identities = 152/207 (73%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || |||||||| ||||| || || ||||| | ||||||||||| || ||
Sbjct 276032 ACGAAGACGCAAAACAAGGTGAAGAGTTGACTCCTTTTGAATATTGTAATCGGAGAAGGT 276091
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | ||| || || || ||||| || || ||||| || || || ||
Sbjct 276092 ACGGCCATCCTCCA-CTGTTT--TTGCAAAAATAAGACGCTGCTGGTCTGGTGG-ATCCC 276147
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||| || |||||||| |||||| ||| || |||||||| | ||||| || |
Sbjct 276148 TTCCTTATCCTGGATCTTGCCTTTCACATTTTCAATAGTGTCTGAAGGCTCCACCTCGAG 276207
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| || | ||| ||
Sbjct 276208 AGTGATGGTCTTGCCAGTAAGAGTCTT 276234
>seq263
Length=158529
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| || || ||||| || | || || || ||||| | ||||| || | ||
Sbjct 64831 CGAAGCCTGAGCACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTC 64890
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| |||||||| ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 64891 CTACCATCTTCGAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCC 64950
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| ||| |||||| || || || ||| || || |
Sbjct 64951 TCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTATCACTGGGTTCAACCTCAAGG 65010
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| || || || ||||| |||||
Sbjct 65011 GTGATAGTTTTCCCAGTCAATGTTTT 65036
>seq11
Length=672161
Score = 86.0 bits (94), Expect = 1e-11
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| || || || |||||||| || || ||||| || |||||||| || || ||||||||
Sbjct 505738 GAAAATCTGCCCGTCAGTAATGGAAATCACATTAGTTGGGATATATGCCGACACATCACC 505797
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586
|| || ||||| | || || | ||| |||| |||||||||||| |||| |||
Sbjct 505798 GGCCTGAGTTTCAATAATTGGGAGGGCAGTTAAAGATCCACCACCATTGTTTTCATT 505854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192387543964988
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