Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1326 116 5e-21 seq1672 100 4e-16 >seq1326 Length=48828 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||||||||| || ||||| | || |||||||| || |||| ||| | || Sbjct 34366 TGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATGGAC 34307 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 |||||||| ||||||||||| ||||| || ||||| ||||| || |||| | |||| | Sbjct 34306 TCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAAGAA 34247 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 |||| ||||| ||| || ||||| | ||||| | ||||||||| | ||| | | Sbjct 34246 TTTCGAAGACCGTGTTGACTTATTTTCTGTTTTAAACTGGACCAATCCCACAAATCGGTT 34187 Query 75902 GG 75903 || Sbjct 34186 GG 34185 Score = 111 bits (122), Expect = 2e-19 Identities = 200/288 (69%), Gaps = 11/288 (4%) Strand=Plus/Minus Query 76166 GGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCC 76225 || || ||||| | || || ||||| || || ||||| || || ||| || ||| Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694 Query 76226 TTTAGTTTGAGAAAATCAAATTTTCCATC---TATCACAAACATATTAAGAGCTATAGAT 76282 || | ||| |||||| || | | ||| | ||||| ||||||| | ||| |||||| Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634 Query 76283 GCTAGATTACAAACGGCTACCTCATTAGCATTG--GCATATTGTATTATCTCCGTGCATA 76340 || | ||| || ||||||| |||| | ||| | ||| | | ||| || ||||| | Sbjct 33633 GCCAAATTGCACACGGCTATTTCATC--CTTTGAAGAATACTCGACTATTTCAGTGCACA 33576 Query 76341 GATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCT 76400 ||| ||| ||||| ||||||||||| || || ||| ||| ||||| | |||| Sbjct 33575 AATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCCT 33516 Query 76401 TATAAAGAACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 | || | |||| | || ||||||||||| || || ||||| ||||| Sbjct 33515 TGTACA--ACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470 >seq1672 Length=38749 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| || || || || ||||| |||||||| ||||| | ||||| || || Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||||||||||||||| |||| ||||| || | || || || | ||||| || Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 ||| || || || || ||||||||| || ||||| || ||||| ||||| ||| Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070 Query 47070 AAAATATTTTTCATC 47084 ||| | ||||||| Sbjct 32069 AAATTTCCTTTCATC 32055 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 |||||| ||| || || || ||||| ||||||||||| |||||||| || || | || Sbjct 32576 TCGTTACTAAAGGTCAGGCCTGGCATAAGTCCACGCTTCTTGAGCCAGAAGATGGATGCA 32517 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || |||||| || ||||| ||||| || || || || || | | || || | || Sbjct 32516 AAGCTTCCAGAGAAAAATATCCCTTCAACTGCTGCAAAAGCAATCACCCTTTCAGCAAAA 32457 Query 46792 CTGGCATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | | |||| |||||| ||||||| |||||||| ||||| || || ||| Sbjct 32456 GTAGAGTTCTTATCAGCAATCCAGGACAGAGCCCAGTCAGCCTTCTTCTTAACGCATGGC 32397 Query 46849 ATTGTTTCTATAGCATTAAAGAG 46871 || ||||| | ||||| || || Sbjct 32396 ATGGTTTCAACGGCATTGAAAAG 32374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712850612384640