Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02]
9,402 sequences; 286,766,519 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1326 116 5e-21
seq1672 100 4e-16
>seq1326
Length=48828
Score = 116 bits (128), Expect = 5e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
|||||||||||||| || ||||| | || |||||||| || |||| ||| | ||
Sbjct 34366 TGAAATTCTCCAGATAACACTCTCCTCGTATAAATATTTGAAGTGTATGCTTCAATGGAC 34307
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|||||||| ||||||||||| ||||| || ||||| ||||| || |||| | |||| |
Sbjct 34306 TCATTGTTGCCCAAAATTTGGGCAGTAGATGCAGTAGGCATTGGAGCCAAAAGTAAAGAA 34247
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
|||| ||||| ||| || ||||| | ||||| | ||||||||| | ||| | |
Sbjct 34246 TTTCGAAGACCGTGTTGACTTATTTTCTGTTTTAAACTGGACCAATCCCACAAATCGGTT 34187
Query 75902 GG 75903
||
Sbjct 34186 GG 34185
Score = 111 bits (122), Expect = 2e-19
Identities = 200/288 (69%), Gaps = 11/288 (4%)
Strand=Plus/Minus
Query 76166 GGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCC 76225
|| || ||||| | || || ||||| || || ||||| || || ||| || |||
Sbjct 33753 GGATAGTAATTCACGTCGATGATTTTGTTCAGGTTTCTTGTGACCACCTTACTAACTTCC 33694
Query 76226 TTTAGTTTGAGAAAATCAAATTTTCCATC---TATCACAAACATATTAAGAGCTATAGAT 76282
|| | ||| |||||| || | | ||| | ||||| ||||||| | ||| ||||||
Sbjct 33693 TTCAATTTCTTGAAATCATATGTGCGATCAGGTTTCACATACATATTCACAGCAATAGAT 33634
Query 76283 GCTAGATTACAAACGGCTACCTCATTAGCATTG--GCATATTGTATTATCTCCGTGCATA 76340
|| | ||| || ||||||| |||| | ||| | ||| | | ||| || ||||| |
Sbjct 33633 GCCAAATTGCACACGGCTATTTCATC--CTTTGAAGAATACTCGACTATTTCAGTGCACA 33576
Query 76341 GATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCT 76400
||| ||| ||||| ||||||||||| || || ||| ||| ||||| | ||||
Sbjct 33575 AATTTGAACATTTGATGGTTCCAAGATTCTGCTGATTGGATTTTCGATTACACGCATCCT 33516
Query 76401 TATAAAGAACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446
| || | |||| | || ||||||||||| || || ||||| |||||
Sbjct 33515 TGTACA--ACAAGTATGGTGTTCCAGTTTCGATTTGGGATTCAATAAT 33470
>seq1672
Length=38749
Score = 100 bits (110), Expect = 4e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
||| |||| || || || || ||||| |||||||| ||||| | ||||| || ||
Sbjct 32249 ATCCTTAATGTACGTGTCAATCAAAAGGGAGTACATTTCGGAATGCACATTTTCCATCGC 32190
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
||||||||||||||||| |||| ||||| || | || || || | ||||| ||
Sbjct 32189 AATCTGAAATCCGTAAAAGCATCGGGCTTCGGTGACTTGCACTTCCTGGCTGAATCGCTC 32130
Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069
||| || || || || ||||||||| || ||||| || ||||| ||||| |||
Sbjct 32129 CACCAAGTTTTCGTTAACAATTCCATCAGATGCTGCAAAGAAGGCCAAGACATGGGAAAT 32070
Query 47070 AAAATATTTTTCATC 47084
||| | |||||||
Sbjct 32069 AAATTTCCTTTCATC 32055
Score = 89.7 bits (98), Expect = 7e-13
Identities = 142/203 (70%), Gaps = 3/203 (1%)
Strand=Plus/Minus
Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731
|||||| ||| || || || ||||| ||||||||||| |||||||| || || | ||
Sbjct 32576 TCGTTACTAAAGGTCAGGCCTGGCATAAGTCCACGCTTCTTGAGCCAGAAGATGGATGCA 32517
Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791
|| |||||| || ||||| ||||| || || || || || | | || || | ||
Sbjct 32516 AAGCTTCCAGAGAAAAATATCCCTTCAACTGCTGCAAAAGCAATCACCCTTTCAGCAAAA 32457
Query 46792 CTGGCATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848
| | | |||| |||||| ||||||| |||||||| ||||| || || |||
Sbjct 32456 GTAGAGTTCTTATCAGCAATCCAGGACAGAGCCCAGTCAGCCTTCTTCTTAACGCATGGC 32397
Query 46849 ATTGTTTCTATAGCATTAAAGAG 46871
|| ||||| | ||||| || ||
Sbjct 32396 ATGGTTTCAACGGCATTGAAAAG 32374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712850612384640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |