Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orchesella_20cincta_20[genbank_20GCA_5F001718145.1_202016-09-02] 9,402 sequences; 286,766,519 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq159 111 1e-19 seq463 109 5e-19 seq263 89.7 5e-13 seq47 82.4 7e-11 >seq159 Length=219009 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| || || |||||| | Sbjct 159703 CCACCTCGAAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGCTG 159644 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || ||||| || || || |||| ||||||||||| | ||| Sbjct 159643 AGGGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGG 159584 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| | || || | |||| | | |||||| | ||||| Sbjct 159583 ATTCCTTCCTTGT-CTTGAATCTTGGCCTTAACGTTTTCGATAGTGTCAGAGGGTTCCAC 159525 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || |||||||| ||||| |||||||| Sbjct 159524 CTCCAATGTGATAGTCTTTCCTGTAAGCGTCTTAACGAAGATCTGCAT 159477 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||||| || || || |||||| Sbjct 157559 GCCACCTCGGAGACGGAGGACGAGATGGAGTGTAGATTCCTTTTGGATATTGTAGTCGCT 157500 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || | |||||| || || || || || || ||||| || | ||| Sbjct 157499 GAGGGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGTTGATCTGGGGG 157440 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||| || ||| | ||||| | || | | |||||| | ||||| Sbjct 157439 AATGCCTTCCTTATCT-TGAATCTTTGCCTTCACATTTTCGATAGTGTCAGAAGGCTCCA 157381 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || || || ||||| ||||||||||||||| Sbjct 157380 CCTCAAGGGTGATCGTCTTGCCAGTGAGTGTCTTCACGAAAATCTGCATG 157331 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| || ||||||||||||||||| || Sbjct 159247 GCCACCTCGGAGACGGAGGACGAGATGAAGGGTGGATTCTTTCTGAATGTTATAGTCTGA 159188 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || | || ||||| || || || || ||||| ||||| | ||| Sbjct 159187 AAGGGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCTGGGGG 159128 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||| ||| || ||| | | | ||||| || | || || Sbjct 159127 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCACTGGGTTCTAC 159068 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || |||| || || ||||| ||||||||| Sbjct 159067 CTCTAAGGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCATG 159019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || |||||||| || ||||||||||| || || || ||| Sbjct 159931 CCTCCACGAAGACGAAGGACAAGATGCAGAGTCGATTCCTTCTGAATATTGTAATCAGAG 159872 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||| || || || || || || ||||||||||| | |||| Sbjct 159871 AGAGTACGTCCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGTTGGTCTGGGGGA 159812 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||| || ||| || ||| | | | |||||||| | || ||| Sbjct 159811 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATCGTGTCGCTGGGTTCTACC 159752 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 159751 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 159705 >seq463 Length=112955 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| |||||||| || |||||||| || | | || ||||| || || ||||| || | Sbjct 58491 CCTTTTGAATGTTGTAATCGGAGAGTGTCCTTCCATCCTCGAGTTGTTTTCCGGCAAAGA 58432 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| || |||| ||| | | |||||||||| ||| || ||| | | Sbjct 58431 TCAACCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 58372 Query 41793 ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 | ||||| || | |||||||| | ||| || ||||||||||| || || || |||| Sbjct 58371 CGATCGTGTCACTGGGTTCCACCTCAAGCGTGATGGTTTTACCCGTGAGGGTTTTAACGA 58312 Query 41853 AAATCTGCATGTT 41865 |||||||||| || Sbjct 58311 AAATCTGCATTTT 58299 >seq263 Length=158529 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| ||||||| ||| |||||| |||||||| ||||| ||||| | | || || Sbjct 64842 CACAAGATGCAACGTTGACTCCTTTTGAATGTTGTAGTCACTAAGGGTCCTACCATCTTC 64901 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||| || ||||| || |||| ||||||||||| | ||| | | ||||||||| Sbjct 64902 GAGCTGTTTACCGGCAAAGATCAAACGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCTTG 64961 Query 41773 GATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| || || | ||| || || | || ||||| | || || ||| Sbjct 64962 GATCTTGGCCTTGACATTTTCG--ATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTT 65019 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| || || || || |||||||| Sbjct 65020 TTCCCAGTCAATGTTTTCACAAAGATCTGCAT 65051 >seq47 Length=390960 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || |||||| |||||||| || || || ||||| || Sbjct 276716 AGACGAAGGACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAAAGGGTACGG 276775 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGGAACGCTCTC 41763 | || || | ||| || || || || || || ||||| ||||| | |||| | || || Sbjct 276776 CCATCCTCCAACTGTTTACCAGCAAAAATAAGACGCTGCTGGTCTGGTGGGATCCCT-TC 276834 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||| ||| ||| || ||||| | ||||| || | |||||||| | || Sbjct 276835 CTTATCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCCACCTCGAGAGT 276894 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || ||||||||||| Sbjct 276895 GATGGTCTTGCCAGTAAGAGTCTTGACAAAAATCTGCAT 276933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462249667722400