Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq65 91.5 3e-13 seq145 89.7 1e-12 seq70 89.7 1e-12 seq55 89.7 1e-12 seq25 89.7 1e-12 >seq65 Length=1316160 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 1022096 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1022155 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1022156 CCCCACGTTGGGC 1022168 >seq145 Length=2710478 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1773448 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1773389 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1773388 CCCACGTTGGGC 1773377 >seq70 Length=2372050 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2055771 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2055712 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2055711 CCCACGTTGGGC 2055700 >seq55 Length=4851298 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3476167 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3476226 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3476227 CCCACGTTGGGC 3476238 >seq25 Length=4911174 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 281760 CTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAG 281819 |||||| |||||||||||| ||||||| || || ||||| | || | | | Sbjct 1973823 CTCGCGGAGTCTTTACCACCACAAAGCCTCGTACCGAATTGACCATTGGGTTGAAGCAAA 1973764 Query 281820 TTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGAT 281879 || ||||| ||||| |||||| | | || || | || | ||| || || ||| || Sbjct 1973763 TTTATGTTGTTGCTACCGACGAAGTTTTGTGCTAAATTAATGATGGTTGCCATAAGGGAC 1973704 Query 281880 ACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTC 281939 || || || |||||||| ||| ||||||||||| ||||| | ||| |||||||| Sbjct 1973703 ACTTCGCCATGGTGATACGCGGAATGTTCGGCAACTGAACCAGATAGCTGCGCTACCTTG 1973644 Query 281940 ACGT--CTGATGTCAAGTTGCGTTTGAAAGCGC-AATATAATACTTTTCGTTGAGAAGGC 281996 || | | ||||| || || || ||||| | || | |||||||| ||| ||| Sbjct 1973643 ACTTCACGTTTGTCA--TTACGCTT-AAAGCACGTGTACATTACTTTTCTCTGACCAGGT 1973587 Query 281997 TTGAAACCATC 282007 |||||||| || Sbjct 1973586 TTGAAACCGTC 1973576 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 281550 ATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAA 281609 || ||| | ||||||||| | ||||| || || |||||| |||||||||||| | | Sbjct 1974122 ATTTCTCTAGGATTATAATTAGGAATTTTCGTCATCCAACCAGTTCCAATACCATCGGCA 1974063 Query 281610 CCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCA 281669 ||||||||||||| |||| |||| ||||| ||| | | || |||||| | | Sbjct 1974062 CCATTTACCAAAACCATCGGTATAACAGGTATGTAATAAACGGGCTCAATTCTCTGGTTG 1974003 Query 281670 TCATCATACAAATACTTCA 281688 |||||||| |||||||| Sbjct 1974002 TCATCATATTCATACTTCA 1973984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811314045680