Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq38 91.5 2e-13 >seq38 Length=2292016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || || || |||| | |||||||| || || | || || || || | || Sbjct 218944 ATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGG 218885 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 |||||||| ||||||||||| |||| | |||||||||| ||| ||||| | || Sbjct 218884 AATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACTAAACCGTTCTACAAGA 218825 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC 16629 || ||||| |||||||| ||| |||||||| || || Sbjct 218824 TTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGC 218787 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093 || || || |||||||| ||||| || ||||| | | ||| || || || || | | Sbjct 219544 CTGTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAGTTCATACCAATCATTTCA 219485 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGC-TTCTTTAATGATATC 16152 || || ||||| | ||| ||||||| ||||||||| |||| || ||||||| | || Sbjct 219484 ACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACGGCATTCTTTA-TAATGGA 219426 Query 16153 GGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTC 16212 || | ||| || |||||| | || | ||||||||||| | |||||| ||||| Sbjct 219425 TGTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAACATCAAACACGCAAAGTC 219366 Query 16213 GCAATG 16218 ||||| Sbjct 219365 ACAATG 219360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408416451520