Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq116 145 9e-30 >seq116 Length=4125705 Score = 145 bits (160), Expect = 9e-30 Identities = 233/328 (71%), Gaps = 14/328 (4%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| || ||||| || | ||||| || |||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 53610 TATCTATAATTTTATTGAGGTT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 ||||||| | || || || || | | |||| ||||| | || || |||||||| | Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAA--CCTTTG-CGACTTCTTTCAGTTTAA 2592080 Query 53667 GAAAATCAAATT-----GTCCATCTATT-ACAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||| ||||||| || | ||| ||||||||||||| || || || || | || Sbjct 2592081 CAAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAAT 2592140 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 | || |||||||| |||| || | | ||| | | || || || || ||||| || | Sbjct 2592141 TGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGC 2592200 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 53839 || || || |||| |||||||||||| | ||| | || || ||| ||||| || Sbjct 2592201 TTTTAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGC 2592259 Query 53840 ATGAATGGCGTACCAGTTTCAATCTGGG 53867 ||| | || || |||||||||| |||| Sbjct 2592260 ATGTACGGAGTTCCAGTTTCAACTTGGG 2592287 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 53135 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 53194 ||||| || || || | ||||| ||||| || | |||| || || || || |||||| Sbjct 2591385 AGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTG 2591444 Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 || |||||||| | || || || ||||||||||| || || || ||||| || ||||| Sbjct 2591445 GTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATT 2591504 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 53314 || || | | ||| ||| | || ||||| | || ||||| ||||| |||| | || Sbjct 2591505 GGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCC 2591564 Query 53315 CAATTCCAAAGAT 53327 || |||||||||| Sbjct 2591565 CAGTTCCAAAGAT 2591577 Score = 111 bits (122), Expect = 2e-19 Identities = 180/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || |||||||| || | | || | ||| ||||| ||||| ||||| || ||||| Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 | || || | | |||||| || || ||| | || |||||| || ||||||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 | || || |||||||||| ||| ||||| ||||||||||||| ||| || || || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATCTTT 2593233 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 || | ||| | | || | |||||||||||||| || || || ||| |||| || Sbjct 2593234 AGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 2593293 Query 54644 TAAATAATAACTGAGTTGA 54662 |||||||| | || |||| Sbjct 2593294 TAAATAATTGCAGAATTGA 2593312 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 |||| |||| | |||||| | | |||||||||| || ||||||||||| || | | Sbjct 2592423 GTGTGTACAGTTCTTCAAATTTTTTGCCCCAAACATCATCTAATCCAGGACACTCGTGAG 2592482 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||| || ||||| | || || || |||||||||||||| ||||||||||||| Sbjct 2592483 GACACATTAAAGACCATTTGCCATCGTCAAAGACTCGTTTCATAAACAGATCAGGAATCC 2592542 Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 | | || ||| | ||||| | | ||| ||||| || |||||| Sbjct 2592543 ACAAGGCATAAAACAATTCTCTTGCACGATGCTCCTCTTTGCCTGTA 2592589 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || |||||||| || | ||| || || || |||| || ||||| || ||||| || Sbjct 2593511 TTTCTTAGTTTCTTTATGCAAATTCGAAACAGCAATTCGGGCTGCTAGTATTGCATAGTC 2593570 Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGT 54897 | |||| ||| || ||| || || |||| |||| ||| | || | ||||||||| Sbjct 2593571 TGCGTGTTTTGTCGTCATAGTCGCAGCAGTTTCAGCTGCTAGATTATCAAGTTCTACCGT 2593630 Query 54898 TGTTACTCCA 54907 |||||||||| Sbjct 2593631 TGTTACTCCA 2593640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714653457280