Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq116 109 5e-19 >seq116 Length=4125705 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | || |||| || | || ||||||||||| ||||||||||| | Sbjct 2789871 TTCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGG 2789812 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | ||||| ||||| ||||| ||| | || |||||||||||||| | Sbjct 2789811 ATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTG 2789752 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | ||| || || | ||| Sbjct 2789751 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGA 2789692 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| ||||||||||| || | || || ||||| || |||||| Sbjct 2789691 CTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | || |||| || | || |||||||| || ||||| ||||| | Sbjct 2789643 TTCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2789584 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || | ||||| ||||| ||||| ||| | || ||||||||||| || | Sbjct 2789583 ACAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTG 2789524 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||||| | ||| ||||| | ||| Sbjct 2789523 GAATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGA 2789464 Query 21127 TTTCCACGGTAATGGTCTTGCCGGT 21151 ||||| ||| |||||||||||||| Sbjct 2789463 CTTCCAGGGTGATGGTCTTGCCGGT 2789439 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| |||||||||||| ||||| || ||||| | ||||| || | || Sbjct 2790538 AGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCT 2790479 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || ||||| ||| | || | ||||||||| ||| || | |||||| || || Sbjct 2790478 TCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCC 2790419 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | | | || || | |||| ||| | ||| || || Sbjct 2790418 TGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTT 2790359 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | |||||| || || || ||||| Sbjct 2790358 TTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422254383078176