Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq116 138 1e-27 seq20 100 3e-16 >seq116 Length=4125705 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||||||||| |||||||| |||||| | || || || || || Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| |||| || |||| || ||||| ||||| || |||| || Sbjct 2790387 GACACGATTGAAAACG-TCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCA 2790445 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| || || || || | || |||||| ||||||||| Sbjct 2790446 GCAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAA 2790505 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| |||| |||||||| || Sbjct 2790506 TATTCAGAAGGAGTCCACTCTGCATCTCGT 2790535 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||||||||| | || ||||| || | Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||||| || || || || || ||| ||||||| Sbjct 2790843 GACACGATCGAGAACG-TAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCA 2790901 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||||| ||| || ||||| || || || | ||||| | ||| ||||| Sbjct 2790902 ACAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAA 2790961 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || ||| |||| | ||| | |||| ||| Sbjct 2790962 CATCCAGAAGGAGTCCACCCTACATTTAGTACTTCGCCTTCGGGGAGGC 2791010 Score = 122 bits (134), Expect = 9e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| ||||||||| | || ||||| || |||| | | | Sbjct 2789425 TCGTTAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCG 2789484 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | |||| ||| |||| ||||| ||||| || || | || ||||| ||||| Sbjct 2789485 AGAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCAGATCAGCAGAGACTC 2789543 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | ||||| || ||||||||||||||||||| Sbjct 2789544 ATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 2789603 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| | || || || || || |||| Sbjct 2789604 GAGTCGACCCTTCACCTGGTCCTGCG 2789629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 40682 TCCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 || ||||| ||||| || || || || || | || || || ||||| ||| |||| ||| Sbjct 2789195 TCAGAAAACATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTC 2789254 Query 40741 GAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 || || |||||| | ||| | |||| || |||| || || ||||| || || Sbjct 2789255 GAGGCTTCCGACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCA 2789314 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 | || ||||| | | |||| ||| ||||| || ||||| |||| || || | | Sbjct 2789315 CCCGATCAGCAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCC 2789374 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||||||||||||| | || || || || || |||| Sbjct 2789375 GATTACAACATCCAGAAGGAGTCGACCCTTCACCTGGTCCTGCG 2789418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || |||||||| || || ||| | || || ||||| | Sbjct 2790555 ATGCAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCG 2790614 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | ||| |||| ||| || || || || ||||| | ||||| Sbjct 2790615 GACACCATCGAAAACGTTAAAGCCAAAA-TTCAGGATAAGGAAGGGATCCCGCCAGACCA 2790673 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| || ||||| |||| || | || || || |||||||| Sbjct 2790674 GCAGAGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACGCTTTCAGACTACAA 2790733 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||| ||| | | ||| ||| Sbjct 2790734 CATTCAGAAAGAGTCAATGCTTCAT 2790758 >seq20 Length=2461668 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || || || Sbjct 1188938 ATGCAGATCTTCGTGAAGACCCTAACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCC 1188997 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||| | || || | ||||| |||||||| || |||| || Sbjct 1188998 GATACCATCGAGAACG-TCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCA 1189056 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||| |||| || | | || || ||||| || Sbjct 1189057 GCAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCAGGACGCTTTCTGACTATAA 1189116 Query 40869 CATCCAGAA 40877 ||||||||| Sbjct 1189117 CATCCAGAA 1189125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213171935360