Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq25 156 6e-33 seq116 120 5e-22 >seq25 Length=4911174 Score = 156 bits (172), Expect = 6e-33 Identities = 377/556 (68%), Gaps = 20/556 (4%) Strand=Plus/Plus Query 203120 TTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTATAA 203179 |||| || | ||||||||| ||||| || || | || ||| || |||||||||||||| Sbjct 4899593 TTTAAAGTATCTATTGCCCATTTATTTGCTCCTTGTAAATTGTCATAATTTTCATTATAG 4899652 Query 203180 TAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAACTTCTACC 203239 ||||||||||||||| || ||| | | ||||| |||||||| ||| |||| || Sbjct 4899653 AAACAAAAATTATCACTTAATTCCCTTCTGATAATTGCTTCTTCCATAAAGGCTTCAACG 4899712 Query 203240 GATTTAGGATATAATTT---TTTATATTTGTTAATTTCTAATATTATTCTTTGAGTTGAA 203296 |||| | | ||||| |||||| || | | ||||| || | |||| || Sbjct 4899713 GATT---GCTTGAATTTACATTTATACTTTTGCACTTCTATGATACACCGTTGAACGGAT 4899769 Query 203297 ATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGATCATTT 203356 || |||||| || | ||| ||||| |||||||| | | || | |||||||| Sbjct 4899770 ATCATACCAAAGTGAAACCACGGTGACAAATTACTAGTAACGTTTTCTACAGGATCATTA 4899829 Query 203357 Ctttttttagcataatcttttaatctattttgtataaatatatctaatattttaaatgca 203416 | |||| |||||||||||| | || || ||| | || || | | |||| Sbjct 4899830 CGTTTTAGGTAATAATCTTTTAAACGATCCATTAGAAAAGTTTC-AAACTGGTTGATGCC 4899888 Query 203417 tattttGTA-CCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAATATTTA-ATG 203474 | ||| || |||| | || ||||| || ||| | || || || | || || Sbjct 4899889 TGCTTTATACCCAGGTGTTAACCAAGTAA---GTTCAGCAATTGATTCTGCTTGTACATC 4899945 Query 203475 ATTGTTCTGCttttttccaatt-at-tatttattttaat-atatgtattataagtatgtt 203531 ||| | || ||| |||||| || | || | || | | | | ||||| | ||| | Sbjct 4899946 ATT-TAGAGCAGTTTCCCAATTGATGTCTTCAAATTGTTCAGAAGCCTTATACGGATGCT 4900004 Query 203532 taataataggtataaattCAGTTAAATATTCTGAT-AATTTAT-AATTTATTTTATTTCT 203589 |||||| || |||||| || || | ||||| |||| | |||| ||||| || || Sbjct 4900005 TAATAACTGGGGGAAATTCGGT--AAGAAACTGATCTATTTGTGAATTGATTTTGTTCCT 4900062 Query 203590 AATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTACAATATTATG 203649 |||||| |||||||||||| ||||| ||| | ||||||||| |||| ||| ||||| Sbjct 4900063 AATGGTACGTGCAGAATATTCCAATTTGTTAGATGTAATCCAACAAGGTATAATGTTATG 4900122 Query 203650 TGAATCAACTTGATAA 203665 || |||||| ||| || Sbjct 4900123 TGCATCAACCTGAAAA 4900138 Score = 131 bits (144), Expect = 3e-25 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 ||||| |||||||||||||| | |||||||||| || || |||||||||| Sbjct 4899228 CCAACGTATCCATTTGGATCGCATCCATCTATACTGTACTTGTCATTTAAATAAATAGAC 4899287 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 | |||| || |||| |||||||| |||||||| |||| ||| |||||| Sbjct 4899288 CATTCAAGAGCTTGCTCAGGTGTACGAGTCCATTCCAATATTTTCTTAGACCAGTACATT 4899347 Query 202988 CTTAAATATCCATGCAT-TTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAA 203046 |||||| |||||||||| ||| ||||| | |||| || ||||| | | ||||||||| Sbjct 4899348 CTTAAAAATCCATGCATCTTTCCCATACA-CATCAACTGATTTTGAGCAGAATTCCATAA 4899406 Query 203047 ATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCT 203100 || || |||||||| | ||| |||| || |||| ||| || | || ||| Sbjct 4899407 ATCATCGTGAGTTAACGAGGCTTCCAGTTCATGTAAATCATAAATGTATTCTCT 4899460 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 202765 AAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTTTC 202824 ||| || ||| ||| |||| |||| ||||||| || ||||| ||||||| |||||| Sbjct 4899037 AAACTTTCGTTGACAGCCTTTATAATTCATATACCTTATTTTTCCAAATACATTTCTTTC 4899096 Query 202825 TTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 ||||| || ||||||||| |||||||||||||||||||| || Sbjct 4899097 CTTCCACCCTTGATCATGAATTCCACAAATTGACCACATACAGCC 4899141 >seq116 Length=4125705 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || |||||||| || || || | ||| | || ||| Sbjct 2789870 AATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATC 2789929 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || | || || ||||| || |||||||| || || || ||||| Sbjct 2789930 CGACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCA 2789989 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||| | || || || || || || ||||| ||| |||| |||||| ||||| || Sbjct 2789990 ACAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAA 2790049 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| ||||| | || || || | | | |||||||| || Sbjct 2790050 CATTCAAAAAGAGTCAACGCTTCACTTAGTCCTCAGGCTTCGAGGTGGAAT 2790100 Score = 113 bits (124), Expect = 7e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || ||||| || || || ||| | ||| | |||||| Sbjct 2790098 AATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATC 2790157 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | ||| || || || || || ||||| || ||||| || || Sbjct 2790158 CGATACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 2790217 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || || || || || |||||||| ||| |||| || | |||||||| Sbjct 2790218 GCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAA 2790277 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||| ||||| ||| ||||||| || Sbjct 2790278 TATTCAAAAGGAATCTACTCTGCATTTAGT 2790307 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||| || ||||| | ||| | |||||| Sbjct 2790555 ATGCAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCG 2790614 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| |||||||| ||||| ||||| || || || || || Sbjct 2790615 GACACCATCGAAAACGTTAAAGCCAAAATTCAGGATAAGGAAGGGATCCCGCCAGACCAG 2790674 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || ||||||||||| |||||| ||||||| | ||| || || Sbjct 2790675 CAGAGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACGCTTTCAGACTACAAC 2790734 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| |||| | ||||||||| | || | || || ||||| Sbjct 2790735 ATTCAGAAAGAGTCAATGCTTCATTTGGTTCTTCGACTTCGTGGAGGTAT 2790784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447161164800