Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq116 132 4e-26 seq20 107 2e-18 >seq116 Length=4125705 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || | ||||| || | | |||||||| ||||||||||| || Sbjct 2790783 TACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTG 2790724 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| | |||||||||||| |||| | | |||||| || || | Sbjct 2790723 AAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCG 2790664 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||| || |||||| |||||| | ||||| |||||||| |||| || Sbjct 2790663 GGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCT-TCC 2790605 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| | ||| ||||| || || ||||| |||||||||||||| Sbjct 2790604 ACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || ||||| || || |||||||||||| ||| || |||| ||||||||| ||||| | Sbjct 2790979 GTGGACTCCTTCTGGATGTTGTAATCG--GATAATGTGCGTCCATCCTCGAGTTGTTTCC 2790922 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| ||||||| ||||| || || || || || || ||||| ||| |||||| | Sbjct 2790921 CAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTGAATTTTGACCT 2790862 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | |||| ||||||| |||||| || | || | ||||| ||||| || | Sbjct 2790861 TTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTTCCCGGTGAGGG 2790802 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || || |||||||| Sbjct 2790801 TCTTCACGAAGATCTGCAT 2790783 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||||||| || ||| || ||||| Sbjct 2789412 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 2789353 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| | | |||||||||||| || || |||||||| ||| | Sbjct 2789352 AGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGA 2789293 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | ||||| | ||||||||||| ||| | || || Sbjct 2789292 ATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTC 2789233 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || ||||||||||||||| Sbjct 2789232 CCAGTCAATGTCTTGACAAAAATCTGCATG 2789203 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||| ||| | || ||||| || || |||||||| ||| | Sbjct 2789641 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2789582 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| |||||| ||||| || || || ||||||| | ||||||||| || || Sbjct 2789581 AGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGA 2789522 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||| ||| || || | |||| ||| || | |||||| Sbjct 2789521 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACT 2789462 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | ||| | || |||||||| || || || || Sbjct 2789461 TCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| ||||| ||||| || ||| | ||| || |||||| Sbjct 2789851 ACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCCATCCTCT 2789792 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || || || ||||||||| Sbjct 2789791 AGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 2789732 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | |||||| || | ||| | || ||| Sbjct 2789731 ATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATGGTCTTG 2789672 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || |||||||||||||| Sbjct 2789671 CCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 || ||||| | || ||||||||||||||||||||||| | | || ||||| ||| || Sbjct 2790079 ACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAAT-GTGCGACCATCTTC 2790021 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| | | || ||||| || || || || || ||||| Sbjct 2790020 TAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTG 2789961 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || ||||| | ||| | ||||| | ||| ||| ||||| | || | || | Sbjct 2789960 AATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGC-CTCCACCTCCAATGTAATGGTCT 2789902 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || || ||||| |||||||| Sbjct 2789901 TGCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 219/326 (67%), Gaps = 9/326 (3%) Strand=Plus/Plus Query 133647 CCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACG 133706 || || |||| || |||||||| || || | || | ||||||| | || | Sbjct 2591966 CCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAATA 2592025 Query 133707 TCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAG 133766 || |||| |||||| |||||||| | || || | | | |||||| |||| || Sbjct 2592026 TCTATGACCTTGTTTAGATTGCGTGTAACAACCTTTGCGACTTCTTTCAGTTTAACAAAG 2592085 Query 133767 TCAAATGTCTTGGCGTCGACG--TCGACGCACTTGTTGACGGCAATACTGGCTAGATTAC 133824 |||||| |||||| | || | | || || |||| || || || |||| ||| | Sbjct 2592086 TCAAATTTCTTGGTG--GAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAATTGC 2592143 Query 133825 AAACGGCCGTCTCGTTCTCGTC-GCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCAT 133883 | ||||| || | | | | | |||||| ||||| || | ||||| ||||||| | Sbjct 2592144 ATACGGCTACTTCAT-CAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGCTT 2592202 Query 133884 TTGATGGTGCCCAAAtttttttGATT-GCTAAAGTTATTGCAATGATCCTTGTATAGCAT 133942 || || ||||| | ||||| |||||| | | | |||||| ||||| || || ||||| Sbjct 2592203 TTAATTGTGCCTAGATTTTGTTGATTCGATTTACG-ATTGCAGTGATCTTTATACAGCAT 2592261 Query 133943 GTACGGCCCGCCGGTTTCGACGTTGG 133968 |||||| || ||||| || |||| Sbjct 2592262 GTACGGAGTTCCAGTTTCAAC-TTGG 2592286 >seq20 Length=2461668 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || | ||| ||||||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 1189093 ATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTT 1189034 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| || || ||| || | |||| ||| || | ||| ||||||| ||| | Sbjct 1189033 GTCCTGGATCTTAGCTTTGACGTTCTCGATGGTATCGGACGCCTCCACCTCGAGGGTGAT 1188974 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || || || ||||||||| Sbjct 1188973 GGTCTTGCCTGTTAGGGTCTTCACGAAGATCTGCATG 1188937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825451079712