Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq25 86.0 1e-11 >seq25 Length=4911174 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 189164 AGTAACTTATCTCCGTGGCTACATTTTGGTCATG-TATCCGCACAACGTGTTGCCTTAGA 189222 ||||| || || |||||| | || |||||| ||| |||||| ||||| | | |||| Sbjct 4899804 AGTAATTTGTCACCGTGGTTTCACTTTGGT-ATGATATCCGTTCAACGGTGTATCATAGA 4899746 Query 189223 AGTATTAAAATGTATACGAGAAAGCaaaaaaaaCGTTGAAACGTTTATAGATGAAATAAT 189282 ||| ||| | || | | || ||| || ||||||| | ||||| || ||| ||| Sbjct 4899745 AGTGCAAAAGTATAAATGTAAATTCAAGCAATCCGTTGAAGCCTTTATGGAAGAAGCAAT 4899686 Query 189283 TGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATGA 189333 | | ||||| ||| || ||||||||||||| |||||| || ||||||| Sbjct 4899685 TATCAGAAGGGAATTAAGTGATAATTTTTGTTTCTATAATGAAAATTATGA 4899635 Score = 84.2 bits (92), Expect = 4e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 |||| ||||||||||| ||||| ||| | || ||| || |||||| |||||| ||| Sbjct 4899143 TAGGCTGTATGTGGTCAATTTGTGGAATTCATGATCAAGGGTGGAAGGAAAGAAATGTAT 4899084 Query 189684 TTGGAAAGATAAGATATATGAATTAT 189709 ||||||| ||||| |||||||||||| Sbjct 4899083 TTGGAAAAATAAGGTATATGAATTAT 4899058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923185998597440