Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq65 120 3e-22 seq64 116 4e-21 seq3 114 1e-20 seq116 111 2e-19 seq17 111 2e-19 seq70 104 3e-17 seq87 96.9 4e-15 >seq65 Length=1316160 Score = 120 bits (132), Expect = 3e-22 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 699320 TATAAAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 699261 Query 60113 ATACTCACCACTATACTACCGAGGATTGAAT 60143 ||||| ||||||||||||||||||| ||||| Sbjct 699260 ATACTGACCACTATACTACCGAGGAATGAAT 699230 >seq64 Length=2089853 Score = 116 bits (128), Expect = 4e-21 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1287184 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1287243 Query 60117 TCACCACTATACTACCGAGGATTGAAT 60143 | ||||||||||||||||||| ||||| Sbjct 1287244 TGACCACTATACTACCGAGGAATGAAT 1287270 >seq3 Length=3390926 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 3381564 AAAAATATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3381623 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 3381624 TGACCACTATACTACCGAGGA 3381644 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/75 (87%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 60053 TATGAAAAA---TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 ||||||||| ||| |||| |||| ||||||||||||| |||||||||||||||||||| Sbjct 3386573 TATGAAAAAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 3386632 Query 60110 GACATACTCACCACT 60124 | ||||| |||||| Sbjct 3386633 GGGATACTGACCACT 3386647 >seq116 Length=4125705 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || ||||||| || |||||||||||||| ||||||| ||| || || | Sbjct 2790313 CGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCA 2790254 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || |||| ||||| |||||||| || | || ||||||||||| || | | |||||| Sbjct 2790253 TCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTG 2790194 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || ||| | || | | || ||| | ||| || || | |||||| Sbjct 2790193 TCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATG 2790134 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || || || ||||| |||||||| |||||| Sbjct 2790133 GTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||| |||||| ||||||||||| || | || || || | || || || || Sbjct 2790530 ATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTG 2790471 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| ||||| || || | || |||||| || | || | || || || ||| ||| | | Sbjct 2790470 CTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCC-TGAATCT 2790412 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | ||||| | | | ||||||| || ||||| || | ||||| |||||||| | Sbjct 2790411 TAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAG 2790352 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || ||||| ||||| Sbjct 2790351 TGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || || || || | | ||| || | || ||||||||||| || || || Sbjct 2789834 CTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAA 2789775 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||| ||||||||| | || | | |||||||| ||| || || | | Sbjct 2789774 GATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATT 2789715 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||| | || || || | |||||||| ||||| || || ||||| || Sbjct 2789714 CTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAAC 2789655 Query 43172 AAAGATTTGCATT 43184 ||| || |||||| Sbjct 2789654 AAAAATCTGCATT 2789642 >seq17 Length=2940332 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 314000 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 314059 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 314060 TGACCACTATACTACCGAGGA 314080 >seq70 Length=2372050 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2056236 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2056177 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 2056176 TACTACCGAGGA 2056165 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2059873 AAAAAAATCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2059814 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 2059813 TGACCACTATACTATCGAGGA 2059793 >seq87 Length=371117 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 |||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 90062 AATTAACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGA 90121 Query 60120 CCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 90122 CCACTATACTATCGAGGA 90139 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||| | |||||||| |||||||||||| ||||| |||||||||||| Sbjct 86932 CGGCGGGGAATCGAACTCCGGTCTCCCACGTGACAGGCGGGGATACTGACCACTATACTA 86991 Query 60131 CCGAGGA 60137 |||||| Sbjct 86992 TCGAGGA 86998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810909734080