Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq23 96.9 5e-15 seq116 93.3 6e-14 seq61 86.0 9e-12 >seq23 Length=3064571 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||||||||| || || |||||||| ||||| || || || || ||||| ||||| || Sbjct 1521381 TCCACCTCTCAGCCTCAATACCAAGTGTAACGTTGACTCCTTTTGGATATTGTAATCCGA 1521440 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | ||| || | || || ||||||||||| || || |||||||| || || Sbjct 1521441 CAAAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAAATTAACCTCTGCTGATCAGGTGG 1521500 Query 146170 AATTCCTT 146177 ||| |||| Sbjct 1521501 AATGCCTT 1521508 >seq116 Length=4125705 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | ||||| | || ||||| | ||||||||| ||| || ||||||||||| || Sbjct 2790325 CCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGA-ATATTATAATCAGA 2790267 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| |||||||| || ||||| || |||||||| ||||| || || || Sbjct 2790266 CAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGG 2790207 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 2790206 GATTCCTTCCTTGTCCTG 2790189 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| | || | ||| | ||| || || || ||||| || || || Sbjct 2790553 CCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAG 2790494 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | ||| || |||||||| || ||||| ||||||||||||||| Sbjct 2790493 AGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGA 2790434 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 2790433 ATGCCTTCTTTATCCTG 2790417 >seq61 Length=962609 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 24013 CCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGA 24072 |||||||| | || |||| |||||| |||||| | || |||||| ||| ||| Sbjct 694616 CCTTTTACCAAAAGAAGGTAATAACATTTTGAGAACCATTTGGCATGTTGTTCCCATGGA 694557 Query 24073 TCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATCA 24132 ||||| || | |||||| | |||||||||||| |||||| | |||| | |||| Sbjct 694556 TCATCCTCGGGTTCCCAGTCTTTTAAACCACCACCACAATGATAGCACAATGTCTGATCA 694497 Query 24133 CTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTAGTTTTTCT 24174 | || || || |||||||| || || ||||| | || |||| Sbjct 694496 CCCTTCCCCGTGTAAAAGAAACCGGCATCTGCCAATTGTTCT 694455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743517700741120