Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq116 105 4e-18 seq20 104 2e-17 >seq116 Length=4125705 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | ||| |||||||| | || || ||||| |||||||||||||| Sbjct 2789642 TCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2789583 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | ||||||||| || || ||||| | |||||| || || Sbjct 2789582 CAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGG 2789523 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||| | | | || | ||||| | ||||| Sbjct 2789522 AATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGAC 2789463 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 |||| |||||||| |||||||| || || || || Sbjct 2789462 TTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || | || | |||| ||| || || || || || || ||| Sbjct 2790325 CCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGAC 2790266 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || || |||||||| ||||| || | | |||||||||| || Sbjct 2790265 AGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGG 2790206 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| ||||| |||||| | || | || | ||||| | ||||| Sbjct 2790205 ATTCCTTCCTTGTCCTGGATCTTA-GCTTTAACGTTCT-CAATGGTATCGGATGCTTCGA 2790148 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || || ||||| || |||||||||||||| Sbjct 2790147 CCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| ||||| | || | || || | || || || ||||| Sbjct 2790973 TCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAG 2790914 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| ||||| ||| | | ||||| || || || ||||| | Sbjct 2790913 ATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTC 2790854 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || ||||| |||| ||||||||||| |||||||| || ||||| Sbjct 2790853 TCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACG 2790794 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2790793 AAGATCTGCAT 2790783 >seq20 Length=2461668 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| ||||| ||||| || ||| | | | || ||||||||||| || ||||| | Sbjct 1189127 CTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGA 1189068 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318 |||| |||||||| || || | || ||||||||| ||| || ||||| | | Sbjct 1189067 TGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATC-TTAGCTTTGACGTTC 1189009 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||||| || || || || | |||||||| ||||| || || || ||||| Sbjct 1189008 TCGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACG 1188949 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 1188948 AAGATCTGCAT 1188938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068314556160