Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq38 129 5e-25 >seq38 Length=2292016 Score = 129 bits (142), Expect = 5e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 |||||||| |||||||||| | ||||||||| ||||||| ||| ||||| || | || Sbjct 218944 ATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGG 218885 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGAGTAAAACCTTTCTGCTAA 16623 || ||||||||||||| |||||| | | |||||||| | || | ||||| |||| | | Sbjct 218884 AATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACT-AAACCGTTCTACAAG 218826 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 ||||| || || || ||||| ||| ||||| || ||||| | ||| |||||| | Sbjct 218825 ATTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGGACATGTGAAATAAATGT 218766 Query 16684 tttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGA 16728 ||||| |||| || | | |||||||| | ||| | ||| Sbjct 218765 ACGTTCGTCATCTTTTAGGCTGAGCCAGTCAGGTATATCCTGTGA 218721 Score = 102 bits (112), Expect = 8e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || |||||||||| |||| |||| |||||||||||||||||||| || | ||||||| | Sbjct 219768 TTCTGATATTCACCAACTTTCTTCTCAAAGAAATTTGTTTTTCCCTCAAGGGAAATATGT 219709 Query 16004 TCCATAAAATCAAAAGGATTTTTTGA 16029 |||||||||||||| ||||| | ||| Sbjct 219708 TCCATAAAATCAAATGGATTCTCTGA 219683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506588609600