Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq88 127 2e-24 >seq88 Length=2672896 Score = 127 bits (140), Expect = 2e-24 Identities = 208/298 (70%), Gaps = 9/298 (3%) Strand=Plus/Plus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| |||||||| || ||||| || |||| || ||||||| ||| |||| ||| Sbjct 1502586 TTTCCATTATTAACCACAAAACGTGTTAATTGGCGAGCTATTGTTGAGGAGCTATTGTGG 1502645 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 ||||| | ||| | || ||||| | ||| | | || || || || || ||||||| | Sbjct 1502646 TTTATCAGAGGCTGTACTAATTCAAAGGAGTTAGCAGCGAAGGGTGTCAACATTTGGAAC 1502705 Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGAT 20223 || || | ||| | ||| | | || ||| ||| | | | |||| || ||| Sbjct 1502706 GCCAATAGCTCTCGGTCTTTTCTTGATAGTTGTGGTTTTATCGATAGAGAAGAAGGCGAT 1502765 Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283 |||| || || || |||||||| ||||| ||||||||||| ||||||| |||||| || Sbjct 1502766 CTGGGCCCAGTTTACGGATTTCAGTGGAGGCATTTTGGAGCCAAATATGTGGACATGCAC 1502825 Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAA-----TGTTATTAATTTAAT 20336 || ||||| || |||| ||| ||| | || || ||||||||||||||| Sbjct 1502826 ACGGATTATACAGGCCAAG--GTATATC--CTGCATAATTTCTTGTTATTAATTTAAT 1502879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399179446308520