Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq116 116 3e-21 seq61 86.0 5e-12 >seq116 Length=4125705 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || ||| | ||| ||||||||||||||||| || ||| | || ||| Sbjct 2790763 ACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCC 2790704 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||||||| ||||| || |||| ||| ||||| || || | || ||||| ||| | Sbjct 2790703 AATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCCTGA 2790644 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | ||||| | |||||||||| ||| ||||||||| Sbjct 2790643 ATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTTG 2790584 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || || ||||| || ||||| Sbjct 2790583 CCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| | || | || ||||| ||||| ||| || ||||||||||| || Sbjct 2790097 CCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGAT 2790038 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | |||| | || || | || || |||||||| ||||||| ||||| || || || Sbjct 2790037 AATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGA 2789978 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| ||| || |||||| | | |||| |||||||| Sbjct 2789977 ATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACC 2789918 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 2789917 TCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||| || || || ||| ||||||||| |||||||| ||| | | ||| | || || Sbjct 2790992 TACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATCCTC 2790933 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||||| || ||||| || | ||||||||||| || || | || ||||| || Sbjct 2790932 GAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTG 2790873 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| ||| || | | | ||||| |||| || |||| || || || || Sbjct 2790872 AATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTT 2790813 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 2790812 CCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| ||| ||| | || || Sbjct 2789623 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCT 2789564 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | | ||| || || || || | |||||||||||| | Sbjct 2789563 AGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGA 2789504 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | |||| || |||| ||| || |||||| Sbjct 2789503 ATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACTTCCAGGGTGATGGTCTTG 2789444 Query 45308 CCCGTCAGAGTCTTCAC 45324 || || || ||||| || Sbjct 2789443 CCGGTAAGGGTCTTAAC 2789427 >seq61 Length=962609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 13252 TGGCGGATGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTATTGTG 13311 |||| |||||||||||||| ||||| || | ||||| | ||| ||||| |||||| Sbjct 694463 TGGCAGATGCCGGTTTCTTTTACACGGGGAAGGGTGATCAGACATTGTGCTATCATTGTG 694522 Query 13312 ACGGCGGATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTAAGATGGT 13371 || || || ||||| ||||| || || |||| || |||||||| |||| | ||||| Sbjct 694523 GTGGTGGTTTAAAAGACTGGGAACCCGAGGATGATCCATGGGAACAACATGCCAAATGGT 694582 Query 13372 TC 13373 || Sbjct 694583 TC 694584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070693179656