Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq38 123 2e-23 seq20 114 1e-20 seq116 109 5e-19 >seq38 Length=2292016 Score = 123 bits (136), Expect = 2e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 |||||| ||| || | || || || || || || |||||||| || || || ||| | Sbjct 218769 TTTATTTCACATGTCCTTGCATTCTTTGCTGCTTCTGATGGTATCGTCAATGAAAATCTT 218828 Query 57738 GTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAA 57797 || ||| | ||| || ||||| ||||| ||||| || |||||||||| ||||| ||| Sbjct 218829 GTAGAACGGTTTAGTCAGGAAGTACAAGTTACGGAAGCTCGATGCTTTTATGGATTCCAA 218888 Query 57798 GTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850 ||||| || ||||| || ||||| ||||||||||| ||||| || || || || Sbjct 218889 GTGGCTATGGAAAATGTTCATTCTGAAATGTATTCTCTACTAATAGACACTTA 218941 Score = 109 bits (120), Expect = 5e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 ||||||||| || ||||||| || |||||| || ||| |||||||||||| | ||||| Sbjct 218492 AGAGAATCCACGCCGATTTGTGATCTTTCCGGTTCAATGGCCAGACATTTGGGAAATGTA 218551 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 ||| || ||||||||||| || ||||| || ||||||||||| | || |||| Sbjct 218552 CAAGAAAGCAGAAGCATCCTTCTGGACTGTAGAAGAAGTAGATTTATCCAAGG 218604 >seq20 Length=2461668 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || |||||||| || |||||| |||| || || |||| Sbjct 1188937 CATGCAGATCTTCGTGAAGACCCTAACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTC 1188996 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | |||||| | || ||||||||| ||| | || || || || Sbjct 1188997 CGATACCATCGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCA 1189056 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||| || ||||||||||| Sbjct 1189057 GCAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGA 1189092 >seq116 Length=4125705 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| ||||| || || ||||| | || || ||| | ||| Sbjct 2790099 ATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATCC 2790158 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || |||| | || | ||| | |||||||||||| | || |||||||| Sbjct 2790159 GATACCATTGAGAACGTTAAAGCTAAGA-TCCAGGACAAGGAAGGAATCCCACCCGACCA 2790217 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| || || ||||| | || || |||||||| Sbjct 2790218 GCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAA 2790277 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||| ||||| ||| | || || |||| Sbjct 2790278 TATTCAAAAGGAATCTACTCTGCATTTAGTCCTGCGACT 2790316 Score = 107 bits (118), Expect = 2e-18 Identities = 171/242 (71%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 22436 TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 ||||| | ||||||| |||| || | |||||||| ||||| | ||| || || || Sbjct 2591376 TCTTTCAACAGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAG 2591435 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 ||||| ||| ||||||| | ||||| |||||||||| ||||| || || || || Sbjct 2591436 ATGTTACTGGTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCC 2591495 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT- 22614 || ||||| || || | || | || || | | ||||| |||| ||||| |||| Sbjct 2591496 GTAGGCATTGGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTT-TCTTT 2591554 Query 22615 --GAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGC 22672 |||| | ||||| ||| |||| | |||||| || | ||||||||||||| ||| Sbjct 2591555 CAGAGCTGC--CCAGTTCCAAAGATTAGTCGGCGTTAC---GCCCCACATATCGTACTGC 2591609 Query 22673 AA 22674 || Sbjct 2591610 AA 2591611 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || ||||| || |||||| | || || || | ||| Sbjct 2789643 ATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTCC 2789702 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || || |||||| Sbjct 2789703 GACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 2789762 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| | || || ||| | ||| |||||| Sbjct 2789763 CAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAAC 2789822 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| ||||| ||||| || Sbjct 2789823 ATCCAAAAGGAGTCGACCCTTCACCTGGTCCT 2789854 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 ||||||| |||| || || || || || | |||||||||||| || || || |||| Sbjct 2592109 AACAAACATGTTCACAGCTATGGAAGCTAAATTGCATACGGCTACTTCATCA--GGACTG 2592166 Query 23065 G--TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 | ||||| || ||||| ||||| |||||||| | || || ||||| | ||| || Sbjct 2592167 GAATACTCAACGATTTCTGTACAGAGATTGCTGCTTTTAATTGTGCCTAGATTTTGTTGA 2592226 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 || ||| |||||||| ||| || || ||||||||||| || || || || || || Sbjct 2592227 TTCGATTTACGATTGCAGTGATCTTTATACAGCATGTACGGAGTTCCAGTTTCAACTTG 2592285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761184533120