Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq116 138 1e-27 seq38 96.9 4e-15 >seq116 Length=4125705 Score = 138 bits (152), Expect = 1e-27 Identities = 228/322 (71%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| || ||||| || | ||||| || |||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 62848 TATCTATAATTTTATTGAGATT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 ||||||| | || || ||||| | | |||| ||||| | || || |||||||| | Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAA--CCTTTG-CGACTTCTTTCAGTTTAA 2592080 Query 62905 GAAAATCAAA-----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGAT 62958 ||| ||||| | | | ||| ||||||||||||| || | || || | || Sbjct 2592081 CAAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAAT 2592140 Query 62959 TACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 | || |||||||| |||| || | | ||| | | || || || || ||||| || | Sbjct 2592141 TGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGC 2592200 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 63077 || || || |||| |||||||||||| | ||| | || || ||| ||||| || Sbjct 2592201 TTTTAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGC 2592259 Query 63078 ATGAATGGAGTACCAGTTTCAA 63099 ||| | ||||| |||||||||| Sbjct 2592260 ATGTACGGAGTTCCAGTTTCAA 2592281 Score = 116 bits (128), Expect = 5e-21 Identities = 181/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || |||||||| || | || || | ||| ||||| ||||| ||||| || ||||| Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | || || | | |||||| || || ||| | || |||||| || ||||||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 | || || |||||||||| ||| ||||| ||||||||||| | |||| || || || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATCTTT 2593233 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 | | ||| | | || | |||||||||||||| || || || ||| |||| || Sbjct 2593234 AGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 2593293 Query 63882 TAAATAATAACCGAATTGA 63900 |||||||| | ||||||| Sbjct 2593294 TAAATAATTGCAGAATTGA 2593312 Score = 109 bits (120), Expect = 7e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 62373 AGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62432 ||||| ||||| || | || || ||||| || | |||| || || || || |||||| Sbjct 2591385 AGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTG 2591444 Query 62433 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62492 || |||||||| | || || || ||||||||||| || || || ||||| || ||||| Sbjct 2591445 GTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATT 2591504 Query 62493 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCC 62552 || || | | ||| ||| | || ||||| | || ||||| ||||| ||| | || Sbjct 2591505 GGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCC 2591564 Query 62553 CAATTCCAAAGAT 62565 || |||||||||| Sbjct 2591565 CAGTTCCAAAGAT 2591577 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 63201 CCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63260 |||||||||| || |||| |||||| || | |||||||| || ||||| | || || Sbjct 2592449 CCCCAAACATCATCTAATCCAGGACACTCGTGAGGACACATTAAAGACCATTTGCCATCG 2592508 Query 63261 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTT 63320 || |||||||||||||| |||||||||||||| | || ||| | ||||||| Sbjct 2592509 TCAAAGACTCGTTTCATAAACAGATCAGGAATCCACAAGGCATAAAACAATTCTCTTGCA 2592568 Query 63321 CTATGTTCCTCGTTTCCTGTA 63341 | ||| ||||| || |||||| Sbjct 2592569 CGATGCTCCTCTTTGCCTGTA 2592589 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 ||| || ||||| || || | ||| || | || |||| ||| ||||| || ||||| || Sbjct 2593511 TTTCTTAGTTTCTTTATGCAAATTCGAAACAGCAATTCGGGCTGCTAGTATTGCATAGTC 2593570 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 | |||| ||| || ||| || || |||| ||||| ||| | || | ||||||||| Sbjct 2593571 TGCGTGTTTTGTCGTCATAGTCGCAGCAGTTTCAGCTGCTAGATTATCAAGTTCTACCGT 2593630 Query 64136 TGTTACTCCA 64145 |||||||||| Sbjct 2593631 TGTTACTCCA 2593640 >seq38 Length=2292016 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473 || || || || ||||| ||||| ||| | || || ||||| || || | || | Sbjct 219544 CTGTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAGTTCATACCAATCATTTCA 219485 Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533 ||||| ||||| | || | |||||||||||| || || ||||| ||||||| || Sbjct 219484 ACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACGGCATTCTTTATAATGGAT 219425 Query 33534 CTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCG 33593 ||||| ||||| |||| |||| | |||||||||||||||||| || || || Sbjct 219424 GTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAACATCAAACACGCAAAGTCA 219365 Query 33594 CAGTGCAGACCCT 33606 || |||| ||||| Sbjct 219364 CAATGCAAACCCT 219352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810231134080