Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq116 114 1e-20 seq38 114 1e-20 >seq116 Length=4125705 Score = 114 bits (126), Expect = 1e-20 Identities = 217/314 (69%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 38082 GTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTA 38140 ||| ||| ||| ||| || || | |||||| || || ||||| || ||||||||||| | Sbjct 2592662 GTTACCTGTATTTTTT-TTGAGTTCTAGAAATTCAAAGATATCGGCATGCCATGGTTCCA 2592720 Query 38141 TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGT 38200 ||| || | | || ||||||||||||| ||| || |||| | ||| | | | || | Sbjct 2592721 AATACATTGCAAAAGCACCTGGTCTTTTATTACCACCTTGATCGACATAACGAGCAGTAT 2592780 Query 38201 TATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATAT 38260 ||||||||| | | ||| ||||| | ||||||||||| || || | || ||||| Sbjct 2592781 TATTATATACACGAATCATGGGTACCAAACCATTAGATTCTCCATTAGTGCCTGATATTC 2592840 Query 38261 AAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT- 38319 ||| || || |||| ||| | | || | ||| ||||| || || || ||| | Sbjct 2592841 TAGTTCCTTTCGCTCTAATACAATTAATACTTAGTCCGATTCCTCCGGC-TGATTTACTG 2592899 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 || | ||| ||| ||| || |||||| | || || || || || || || | |||| Sbjct 2592900 ATAAGAGCACATCTTTTCAATGTATCATAAATGCCCTCGATGCTATCTTCGCTCATTGTC 2592959 Query 38380 AGTATAAAACAACT 38393 || | ||||| || Sbjct 2592960 AGCAGGAAACAGCT 2592973 Score = 104 bits (114), Expect = 2e-17 Identities = 133/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 37074 ATTCTTTATGTCATTATTCCACATATTTCTACTTATTA-GTTCTCTCAATAGGTGTGGAT 37132 ||| || ||||| | ||||||||||| || | || | ||| |||| || || || | Sbjct 2591336 ATTTTTCATGTCTTCGTTCCACATATT-CTGTTCCGTAAGGTCTTTCAACAGATGAGGGT 2591394 Query 37133 TTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTT 37192 |||| | |||||| ||||| || | |||| || ||||| || || || || || |||| Sbjct 2591395 TTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGTGTACGGTT 2591454 Query 37193 CAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTA 37252 ||||||| || || || | || || || | ||||||||| ||||||||||| || || | Sbjct 2591455 CAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGGGGCGATAA 2591514 Query 37253 G 37253 | Sbjct 2591515 G 2591515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 38392 CTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAAC 38451 || |||||||| || || || | ||| ||||| |||||| || ||||| | || Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 38452 CATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATA 38511 | ||||| || |||| ||||||||||| || | || ||||| | | ||||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 38512 CCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGT 38568 | | || ||| | |||||||||||| ||||||||||| | | ||| |||| || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATC--- 2593230 Query 38569 TTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTA 38628 || ||||| || | | || | ||||| | ||||| ||| |||| | |||||||| Sbjct 2593231 TTTAGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTA 2593290 Query 38629 TCGTA 38633 || || Sbjct 2593291 TCATA 2593295 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 36901 GTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCG 36960 ||||| || | |||| || ||| |||||| ||||| || || || |||||||| Sbjct 2591083 GTAGGCGTAGCCATATGGATGTTCAATGATTGGGACTGATCGATGAAAGCTCCTCTGTCC 2591142 Query 36961 GCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTT 37020 ||||||||| || ||| |||||| |||||||||||||| ||||| || | | ||| Sbjct 2591143 ACTGCCATTTGTAGAATGACTTTTTGTGATATCTCCCAAACTGTTTTGTACAGTGCTTTA 2591202 Query 37021 ATATTATCTGGTA 37033 | | |||||||| Sbjct 2591203 AGGTCATCTGGTA 2591215 >seq38 Length=2292016 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| || | ||| || ||||||| || | ||||||||| ||||||| |||||||||||| Sbjct 218951 ATCACTGATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGC 218892 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 | ||| |||||||| || ||||| || || | | ||||| ||| | ||| | ||| Sbjct 218891 CACTTGGAATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACTAAACCGTTC 218832 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | ||| ||||| || ||||||||| || ||||| ||||| || | |||| || Sbjct 218831 TACAAGATTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGGACATGTGAAAT 218772 Query 12070 AAA 12072 ||| Sbjct 218771 AAA 218769 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 11462 CTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCC 11521 || || || || ||||| |||||||| |||| | || |||||||| || | || Sbjct 219544 CTGTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAGTTCATACCAATCATTTCA 219485 Query 11522 ACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGAC 11581 || || | |||| |||||||||| || | |||||| | ||| |||| | || || || Sbjct 219484 ACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACGGCATTCTTTATAATGGAT 219425 Query 11582 GTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCA 11641 || | ||| || || ||| |||| | |||||||||||| ||||||||||| ||| Sbjct 219424 GTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAACATCAAACACGCAAAGTCA 219365 Query 11642 CAATGTAAACC 11652 ||||| ||||| Sbjct 219364 CAATGCAAACC 219354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519318259840