Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq116 143 4e-29 >seq116 Length=4125705 Score = 143 bits (158), Expect = 4e-29 Identities = 229/322 (71%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| || ||||| || | ||||| || |||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 65641 TATCTATAATTTTATTGAGATT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 ||||||| | || || ||||| | | |||| ||||| | || || |||||||| | Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAA--CCTTTG-CGACTTCTTTCAGTTTAA 2592080 Query 65698 GAAAATCAAATCGCT-----CATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGAT 65751 ||| |||||| || | ||| ||||||||||||| || | || || | || Sbjct 2592081 CAAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAAT 2592140 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 | || |||||||| |||| || | | ||| | | || || || || ||||| || | Sbjct 2592141 TGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGC 2592200 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 65870 || || || |||| |||||||||||| | ||| | || || ||| ||||| || Sbjct 2592201 TTTTAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGC 2592259 Query 65871 ATGAATGGAGTACCAGTTTCAA 65892 ||| | ||||| |||||||||| Sbjct 2592260 ATGTACGGAGTTCCAGTTTCAA 2592281 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 65166 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 65225 ||||| || || || | ||||| ||||| || | |||| || || || || |||||| Sbjct 2591385 AGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTG 2591444 Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 || |||||||| | || || || ||||||||||| || || || ||||| || ||||| Sbjct 2591445 GTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATT 2591504 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 65345 || || | | ||| ||| | || ||||| | || ||||| ||||| |||| | || Sbjct 2591505 GGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCC 2591564 Query 65346 CAATTCCAAAGAT 65358 || |||||||||| Sbjct 2591565 CAGTTCCAAAGAT 2591577 Score = 107 bits (118), Expect = 3e-18 Identities = 179/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || |||||||| || | | || | ||| ||||| ||||| ||||| || ||||| Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 | || || | | |||||| || || ||| | || |||||| || ||||||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 | || || |||||||||| ||| ||||| ||||||||||||| ||| || || || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATCTTT 2593233 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 66674 | | ||| | | || | |||||||||||||| || || || ||| |||| || Sbjct 2593234 AGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 2593293 Query 66675 TAAATAATAACCGAGTTGA 66693 |||||||| | || |||| Sbjct 2593294 TAAATAATTGCAGAATTGA 2593312 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 |||| |||| | ||| || | | |||||||||| || ||||||||||| || | | Sbjct 2592423 GTGTGTACAGTTCTTCAAATTTTTTGCCCCAAACATCATCTAATCCAGGACACTCGTGAG 2592482 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||||||| || ||||| | || || || |||||||||||||| ||||||||||||| Sbjct 2592483 GACACATTAAAGACCATTTGCCATCGTCAAAGACTCGTTTCATAAACAGATCAGGAATCC 2592542 Query 66088 AAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 | | || ||| || ||||| | | ||| ||||| || |||||| Sbjct 2592543 ACAAGGCATAAAACAATTCTCTTGCACGATGCTCCTCTTTGCCTGTA 2592589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165099378240