Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq116 111 2e-19 >seq116 Length=4125705 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| ||| ||||||||||||||||| ||||| | ||||| ||||| Sbjct 2790079 ACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCT 2790020 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| || || || |||||| | ||| ||||| || || || ||||||||||| || Sbjct 2790019 AACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTC-CTG 2789961 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | |||||||| | ||||||||| | || | ||||| Sbjct 2789960 AATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTT 2789901 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || || || || ||||| Sbjct 2789900 GCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||| || || |||||| |||| | | |||||||| ||||| ||||||||||| Sbjct 2790481 TCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTA 2790422 Query 139670 TCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || ||||| | | ||| | ||||||| | |||||| || | ||| | Sbjct 2790421 TC-CTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGAT 2790363 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || | |||||| ||||| || ||||| Sbjct 2790362 TGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058196051200