Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq116 149 9e-31 seq38 96.9 5e-15 >seq116 Length=4125705 Score = 149 bits (164), Expect = 9e-31 Identities = 230/321 (72%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| || ||||| || | ||||| || |||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAG 79577 ||||||| | || || ||||| | | || | ||||| | || || || ||||| | Sbjct 2592024 TATCTATGACCTTGTTTAGATTGC-GTGTAACAACCTTTG-CGACTTCTTTCAGTTTAAC 2592081 Query 79578 AAAATCAAA-----TCGTCCATCTATT-ACAAACATGTTCAACGCGACAGATGCCAGATT 79631 ||| ||||| | || | ||| ||||||||||||| || | || || | ||| Sbjct 2592082 AAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAATT 2592141 Query 79632 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACA 79691 || |||||||| |||| || | | ||| | | ||||| || ||||| || || | Sbjct 2592142 GCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGCT 2592201 Query 79692 CTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAA 79750 ||||| || |||| |||||||||||| | ||| | || || ||| ||||| || | Sbjct 2592202 TTTAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGCA 2592260 Query 79751 TGAACGGAGTACCAGTTTCAA 79771 || ||||||| |||||||||| Sbjct 2592261 TGTACGGAGTTCCAGTTTCAA 2592281 Score = 123 bits (136), Expect = 4e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 79873 CCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCA 79932 ||||||||||| |||||||||||||| |||| ||||||||| || ||||| | ||||| Sbjct 2592449 CCCCAAACATCATCTAATCCAGGACACTCGTGAGGACACATTAAAGACCATTTGCCATCG 2592508 Query 79933 TCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 79992 || |||||||||||||| |||||||||||||| | || ||| | ||||| | Sbjct 2592509 TCAAAGACTCGTTTCATAAACAGATCAGGAATCCACAAGGCATAAAACAATTCTCTTGCA 2592568 Query 79993 CTATGCTCCTCGTTTCCTGTA 80013 | ||||||||| || |||||| Sbjct 2592569 CGATGCTCCTCTTTGCCTGTA 2592589 Score = 120 bits (132), Expect = 4e-22 Identities = 182/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || |||||||| || | | || | ||| ||||| ||||| ||||| || ||||| Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | || || | | |||||| || || ||| | ||| |||||| || ||||||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || |||||||||| ||| ||||| ||||||||||||| ||| ||| || || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATCTTT 2593233 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 | | |||| | | || | |||||||||||||| || || || ||| |||| || Sbjct 2593234 AGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 2593293 Query 80554 TAAATAATAACCGAGTTGA 80572 |||||||| | || |||| Sbjct 2593294 TAAATAATTGCAGAATTGA 2593312 Score = 114 bits (126), Expect = 2e-20 Identities = 177/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCT-CGGTTAAAACTCTAAGGAGATGCGGAT 79054 ||| || || ||||| ||||| | | |||| | | || | || | | ||||| || | Sbjct 2591336 ATTTTTCATGTCTTCGTTCCACA-TATTCTGTTCCGTAAGGTCTTTCAACAGATGAGGGT 2591394 Query 79055 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTT 79114 | || | ||||| ||||| || | |||| || || || || |||||||| || |||| Sbjct 2591395 TTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGTGTACGGTT 2591454 Query 79115 CCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCA 79174 | | ||||| || ||||||||||| || || || |||||||| ||||| || || | | Sbjct 2591455 CAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGGGGCGATAA 2591514 Query 79175 ATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAA 79234 ||| ||| | || ||||| | | ||||| ||||| |||| | |||| | ||||| Sbjct 2591515 GCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCCCAGTTCCAAA 2591574 Query 79235 GATCAGACGG 79244 ||| || ||| Sbjct 2591575 GATTAGTCGG 2591584 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 ||| || ||||| || || | ||| || || || |||| ||| |||| || ||||| || Sbjct 2593511 TTTCTTAGTTTCTTTATGCAAATTCGAAACAGCAATTCGGGCTGCTAGTATTGCATAGTC 2593570 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 || |||| ||| || ||| || || |||| ||||| ||| | || | ||||||||| Sbjct 2593571 TGCGTGTTTTGTCGTCATAGTCGCAGCAGTTTCAGCTGCTAGATTATCAAGTTCTACCGT 2593630 Query 80808 TGTTACTCCA 80817 |||||||||| Sbjct 2593631 TGTTACTCCA 2593640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 |||||| || |||||||| || | |||||||||| || | ||||||||||||| ||| Sbjct 2591729 ATAAGGACCATCCTTTTCCGCAAGTTCACAACTCATTTCAAGAGCTCCGTAATAAAGGGT 2591788 Query 79368 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG 79427 || || || | |||| || | |||||| | | || |||||||| || | ||| Sbjct 2591789 CTCAAAGATTTGAATATTAAGTTTTTGTGCATTTTCACTTTCAAATGGGTATCGCATGAG 2591848 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | ||| || || || | |||||| | |||||||| Sbjct 2591849 GAGAAAAGCATCAGCCAGTCCTTGTATGCCAATACC 2591884 >seq38 Length=2292016 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851 || || || |||||||| ||||| ||| | || || ||||| || || | || | Sbjct 219544 CTGTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAGTTCATACCAATCATTTCA 219485 Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911 ||||| ||||| | || | |||||||||||| || || |||| ||||||| ||| Sbjct 219484 ACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACGGCATTCTTTATAATGGAT 219425 Query 49912 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 49971 ||||| ||||| |||| || | | |||||||||||||||||| || || || Sbjct 219424 GTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAACATCAAACACGCAAAGTCA 219365 Query 49972 CAGTGCAGACCCT 49984 || |||| ||||| Sbjct 219364 CAATGCAAACCCT 219352 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| ||| ||||| || ||| || || || ||||| || || | |||| Sbjct 219271 CCTCATCTCTAGAAATAAGTTCATTACTAAAGGTAAGGCCAGGCATGAGTCCTCTTTTTT 219212 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || | ||||| ||| |||||| || || ||||| || ||||||| Sbjct 219211 TCAACCAGAAAATAGCTGCAAAACTGCCACTAAAGAAAATACCCTCTACAGCAGCAAAGG 219152 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 50158 | |||| | ||| ||| | | ||| ||||| ||||| ||| | ||||| | | Sbjct 219151 CCACAACACGCTCCCCAAATGTCGCGGATTCATGATTAATCCAATTTAGTGCCCAGTTTG 219092 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 | ||||| ||||| || | |||| ||||||||||| Sbjct 219091 CTTTCTTAGCGACACATGGAAGGTTTTCAATGGCATTAAA 219052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260396255040