Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq38 109 5e-19 >seq38 Length=2292016 Score = 109 bits (120), Expect = 5e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 || || || || || |||| |||||||||||| || | ||||||||||| | || Sbjct 218944 ATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGG 218885 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAA 14260 || ||||||||||||| |||||||| |||||||||| || | ||| | ||| | | Sbjct 218884 AATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACT-AAACCGTTCTACAAG 218826 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 ||||||||| || ||||||||| ||| ||||| ||||| Sbjct 218825 ATTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGC 218787 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 || |||||||||| |||| | || |||||||| || ||||| || || || || |||| | Sbjct 219768 TTCTGATATTCACCAACTTTCTTCTCAAAGAAATTTGTTTTTCCCTCAAGGGAAATATGT 219709 Query 13641 TCCATAAAATCAAATGGATT 13660 |||||||||||||||||||| Sbjct 219708 TCCATAAAATCAAATGGATT 219689 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 |||||||| ||| | || | || ||||||| ||| |||||||| || |||| | | Sbjct 219566 ACAACCTAATTCGACCAGAAGCCTGTCAGCAACAAATTCAATATACTGGCACATGAGTTT 219507 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 || |||||||| || | || || || | || || |||||||||| |||||| Sbjct 219506 GCAGTTCATACCAATCATTTCAACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTC 219447 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 || || | |||||||| ||||| || || || || | | | |||||| Sbjct 219446 AACGGCATTCTTTATAATGGATGTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTT 219387 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 ||| || ||||||||||| |||||||| | |||| Sbjct 219386 AAACATCAAACACGCAAAGTCACAATGCAAACCCT 219352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722387182400