Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq116 105 5e-18 >seq116 Length=4125705 Score = 105 bits (116), Expect = 5e-18 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||||||||| |||||| |||| |||| ||| |||||||| || Sbjct 2789395 CTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAA 2789336 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| | ||| ||||||| || | || || || || ||| | | || || | Sbjct 2789335 GATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCACCTTTACATT 2789276 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| ||||||||| || | || || || || || || | || || || Sbjct 2789275 TTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTCCCAGTCAATGTCTTGAC 2789216 Query 43098 AAAAATTTGCA--TTTTCTTAA 43117 |||||| |||| |||||| || Sbjct 2789215 AAAAATCTGCATGTTTTCTGAA 2789194 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | || || ||||| || ||||| | || || | || ||||||||||| Sbjct 2789834 CTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAA 2789775 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | || ||| || || | || | ||||| || || |||| | | || || | Sbjct 2789774 GATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATT 2789715 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| ||||||||| || | || || || || || || ||||| || || Sbjct 2789714 CTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAAC 2789655 Query 43098 AAAAATTTGCATT 43110 |||||| |||||| Sbjct 2789654 AAAAATCTGCATT 2789642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365249526288