Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq116 143 4e-29 >seq116 Length=4125705 Score = 143 bits (158), Expect = 4e-29 Identities = 229/321 (71%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| || |||||||| | ||||| || |||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAG 71660 ||||||| | || || ||||| | | || | ||||| | || || || ||||| | Sbjct 2592024 TATCTATGACCTTGTTTAGATTGC-GTGTAACAACCTTTG-CGACTTCTTTCAGTTTAAC 2592081 Query 71661 AAAATCAAATCTC-----CCATCTATT-ACAAACACGTTCAAGGCAACAGATGCCAGATT 71714 ||| |||||| || | ||| ||||||| ||||| || | || || | ||| Sbjct 2592082 AAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAATT 2592141 Query 71715 ACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACA 71774 || |||||||| |||| || | || ||| | | ||||| || || ||||| || | Sbjct 2592142 GCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGCT 2592201 Query 71775 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAA 71833 || || || |||| |||||||||||| | ||| | || || ||| ||||| || | Sbjct 2592202 TTTAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGCA 2592260 Query 71834 TAAACGGAGTACCAGTTTCAA 71854 | ||||||| |||||||||| Sbjct 2592261 TGTACGGAGTTCCAGTTTCAA 2592281 Score = 120 bits (132), Expect = 4e-22 Identities = 182/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || |||||||| || | | || | ||| ||||| ||||| ||||| || ||||| Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | || || | | |||||| || || ||| | ||| |||||| || ||| ||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || |||||||||| ||||||||| ||||||||||||| ||| ||| || || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATCTTT 2593233 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 | | ||| | | || | |||||||||||||| || || || ||| |||| || Sbjct 2593234 AGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 2593293 Query 72637 TAAATAATAACCGAATTGA 72655 |||||||| | ||||||| Sbjct 2593294 TAAATAATTGCAGAATTGA 2593312 Score = 116 bits (128), Expect = 5e-21 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 71079 ATTTTTGATCTCTTCATTCCATAATTTTCTCT-CGGTTAAAACTCTAAGGAGATGAGGAT 71137 |||||| || ||||| ||||| | | |||| | | || | || | | |||||||| | Sbjct 2591336 ATTTTTCATGTCTTCGTTCCACA-TATTCTGTTCCGTAAGGTCTTTCAACAGATGAGGGT 2591394 Query 71138 TAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTT 71197 | || | ||||| ||||| || | |||| || || || || |||||||| ||||||| Sbjct 2591395 TTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGTGTACGGTT 2591454 Query 71198 CCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 71257 | | || || || ||||||||||| || || || ||||| || ||||| || || | | Sbjct 2591455 CAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGGGGCGATAA 2591514 Query 71258 ATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAA 71317 | | ||| | || ||| ||| | ||||| ||||| |||| | |||| ||||||| Sbjct 2591515 GCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCCCAGTTCCAAA 2591574 Query 71318 GAT 71320 ||| Sbjct 2591575 GAT 2591577 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 71956 CCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCA 72015 |||||| ||| |||||||||||||| || | |||||||| || ||||| | ||||| Sbjct 2592449 CCCCAAACATCATCTAATCCAGGACACTCGTGAGGACACATTAAAGACCATTTGCCATCG 2592508 Query 72016 TCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 72075 ||| |||||||||||||| |||||||||||||| | || ||| | ||||| | Sbjct 2592509 TCAAAGACTCGTTTCATAAACAGATCAGGAATCCACAAGGCATAAAACAATTCTCTTGCA 2592568 Query 72076 CTATGCTCCTCGTTTCCTGTA 72096 | ||||||||| || |||||| Sbjct 2592569 CGATGCTCCTCTTTGCCTGTA 2592589 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| || ||||| || || | ||| || || || |||| ||| ||||| || ||||| || Sbjct 2593511 TTTCTTAGTTTCTTTATGCAAATTCGAAACAGCAATTCGGGCTGCTAGTATTGCATAGTC 2593570 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 || |||| ||| || ||| || || |||| ||||| ||| | || | ||||||||| Sbjct 2593571 TGCGTGTTTTGTCGTCATAGTCGCAGCAGTTTCAGCTGCTAGATTATCAAGTTCTACCGT 2593630 Query 72891 TGTTACTCCA 72900 |||||||||| Sbjct 2593631 TGTTACTCCA 2593640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131347671360