Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq116 98.7 1e-15 >seq116 Length=4125705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 || |||||| || | || | |||||||| | || || || || || ||||||||||| Sbjct 2791013 ATTGCCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATC 2790954 Query 143014 GCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGG 143072 | | ||||| || | || ||||||||||| ||||| |||| || || || || || | Sbjct 2790953 GGATAATGTGCGTCCA-TCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCG 2790895 Query 143073 GAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTT 143132 | || || ||||| || || |||||| |||| | || | |||||||| | | Sbjct 2790894 GGGGAATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCT 2790835 Query 143133 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 | ||||| | ||| | || || ||||| | || || ||||| || |||||| || Sbjct 2790834 CGACTTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCATACCT 2790779 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||||||||| || |||||| |||| | | |||||||| ||||| ||||||||||| Sbjct 2790481 TCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTA 2790422 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | |||||| | | || ||||| | || | Sbjct 2790421 TCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATT 2790362 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || | ||||| ||||| || ||||| Sbjct 2790361 GTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507008467931520