Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21 89.7 8e-13 seq88 86.0 9e-12 >seq21 Length=2719431 Score = 89.7 bits (98), Expect = 8e-13 Identities = 153/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 || |||||||| || ||||| || || | ||| || ||||||||||| || ||||| | | Sbjct 2259758 CCATGCGTCAGATGTCCTCCATCCGGTAAATCCAGACCCATGATTCTCCCATGCGGCTGA 2259699 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | | ||| ||||| || ||||| || ||| || || |||||||| || Sbjct 2259698 ATCAATCCTGTGTAAACTGCAAAATTTGCCGGACTTCCTGAATACGGTTGAACGTTGCAG 2259639 Query 127567 CCCCATTC----GGACTCGTTCAAATTGAACGCTCTG--AGACATCGCTGCTGTGCTAGC 127620 |||||||| ||| |||||||| || ||| || || || || | ||| || | | Sbjct 2259638 CCCCATTCTTCAGGA----TTCAAATTAAATGCT-TGCAAGGCA-CGTTTCTGAGCCAAC 2259585 Query 127621 AGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658 | ||||| ||| ||||||||||| |||||||| || Sbjct 2259584 AACTCGATCTCATCAATAAACTCGTTCCCACCATAATA 2259547 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 126703 TCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCG 126762 |||||||| |||||||| || | || |||| ||||||||||| | ||||| ||| Sbjct 2260707 TCAATGTCTTCCTCTTTGAGTCCCCTCGTTGTCAATGCAGGAGTACCTAACCTGATACCG 2260648 Query 126763 CTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGAT 126815 ||| |||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 2260647 GATGGATTGAGCGCACTCTTATCTCCAGGAACTGTGTTCTTGTTGCAAGCAAT 2260595 >seq88 Length=2672896 Score = 86.0 bits (94), Expect = 9e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 69938 GAGGAGCTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGG 69996 |||||||| |||||| | || || | || ||| | || ||| | ||| | ||||| Sbjct 1502631 GAGGAGCTATTGTGGTTTATCAGAGGCTGTACTAATTCAAAGGAGTT-AGCAGCGAAGGG 1502689 Query 69997 TGTACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGA 70056 ||| ||||||||| || ||| || ||| || | ||| || || | ||| Sbjct 1502690 TGTCAACATTTGGAACGCCAATAGCTCTCGGTCTTTTCTTGATAGTTGTGGTTTTATCGA 1502749 Query 70057 CAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAA 70116 ||| |||| ||||||||||| ||||| |||||||| ||||||||||| | || |||| Sbjct 1502750 TAGAGAAGAAGGCGATCTGGGCCCAGTTTACGGATTTCAGTGGAGGCATTTTGGAGCCAA 1502809 Query 70117 GTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGT 70153 ||||| ||| ||| | || || ||| | || || ||| Sbjct 1502810 ATATGTGGACATGC-ACACGGATTATACAGGCCAAGGT 1502846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050529607360