Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq116 116 3e-21 >seq116 Length=4125705 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| | || | ||||| ||||| || || |||||||| ||||||||||| | Sbjct 2790097 CCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGAT 2790038 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | |||||||| || ||||| ||| | ||||| | |||||| || ||| Sbjct 2790037 AATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGA 2789978 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||| ||| ||| || |||| || || ||| || || Sbjct 2789977 ATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACC 2789918 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || ||||| || || || ||||| || ||||| Sbjct 2789917 TCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| || || || || ||||| || || ||||| || | | | |||||| Sbjct 2790307 ACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCATCTTCT 2790248 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||||||| | ||||| | || |||||| ||| |||||||| ||||| Sbjct 2790247 AATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGG 2790188 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || ||||||||| ||| || || || || ||||| || Sbjct 2790187 ATCTTAGCT-TTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATGGTCTT 2790129 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || ||||| || ||||| Sbjct 2790128 ACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || || |||||||||||| | | | | |||| || | ||| Sbjct 2789406 TGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGTTGC 2789347 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | ||||| | || || ||| ||||||||| || || || ||| || Sbjct 2789346 TTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTC 2789287 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| |||| || || ||| | || || || | ||||||||| || || ||| Sbjct 2789286 ACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTCCCAGTC 2789227 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 | || || |||||||| ||||| ||| Sbjct 2789226 AATGTCTTGACAAAAATCTGCATGTTT 2789200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| |||||||| || || || |||||||||||| || | | | || || Sbjct 2790991 ACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATCCTCG 2790932 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | || | || |||||||| ||||||||||| || || | Sbjct 2790931 AGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTGA 2790872 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| |||||| | || || || || || || || | || |||||||| Sbjct 2790871 ATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTTC 2790812 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || |||||| Sbjct 2790811 CCGGTGAGGGTCTTCACGAAGATCTGCATA 2790782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175068440776