Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq23 102 7e-17 seq116 86.0 5e-12 >seq23 Length=3064571 Score = 102 bits (112), Expect = 7e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| |||| || ||| || |||| ||| ||||| ||||||||||| ||||||||||||| Sbjct 1521381 TCCACCTCTCAGCCTCAATACCAAGTGTAACGTTGACTCCTTTTGGATATTGTAATCCGA 1521440 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 || ||| | | ||||| ||||| ||||| ||| |||| | ||||||||||| Sbjct 1521441 CAAAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAAATTAACCTCTGCTGATC 1521494 >seq116 Length=4125705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || |||||||| | || || |||||||| Sbjct 2789412 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 2789353 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || || || || | || | ||||||||||| || | ||||| || || | Sbjct 2789352 AGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGA 2789293 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| ||||| | | | ||| ||| || ||| |||| ||||||||| || Sbjct 2789292 ATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTC 2789233 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || || ||||||||||| ||||| || Sbjct 2789232 CCAGTCAATGTCTTGACAAAAATCTGCATGTT 2789201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414568070760784