Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq116 159 8e-34 seq38 138 3e-27 seq20 127 5e-24 seq23 98.7 2e-15 >seq116 Length=4125705 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | |||||||| || ||||||||||| ||||| || || | ||| ||| Sbjct 2790310 AGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCATCT 2790251 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| ||| || ||||| || || | ||||| || || || || |||||||| || ||| Sbjct 2790250 TCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCC 2790191 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| || || || | ||||||| | ||| ||||| | || || ||| Sbjct 2790190 TGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATGGTC 2790131 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| ||||| || || ||||| ||||||||| Sbjct 2790130 TTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| ||||| || |||| || | || || ||||| ||||| || || ||| Sbjct 2790100 ATTCCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCA 2790041 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||| ||||||| || || || || || || | ||| |||||||| || Sbjct 2790040 GATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGG 2789981 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||||||||| || || || ||||| | || ||| | || Sbjct 2789980 GGAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCC 2789921 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | |||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 2789920 ACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCATT 2789870 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || ||||||||||| || ||||| || || |||| ||| || || | |||||||||||| Sbjct 2790748 GACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCG 2790689 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || |||| |||||| || || || || || ||||| ||||||||||| || ||||| || Sbjct 2790688 AAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACG 2790629 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||| | ||| || | ||| ||||| | || || ||||| || ||||| ||||| Sbjct 2790628 TTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTG 2790569 Query 104546 ACAAATATCTGCAT 104559 ||||| |||||||| Sbjct 2790568 ACAAAAATCTGCAT 2790555 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || ||||||||||| ||||| || || || | || || Sbjct 2790539 AAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATC 2790480 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || |||||||| |||| ||||| ||||| ||||| || ||||||||||| Sbjct 2790479 TTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATC 2790420 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | ||| || ||||| | || ||| | || || |||| || || || Sbjct 2790419 CTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGT 2790360 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || |||||||| Sbjct 2790359 TTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || | ||| | ||||| || ||||| || || Sbjct 2789400 GTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGTTGCTTGCCG 2789341 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| ||||| || || ||||| || ||||| |||||||| | ||| Sbjct 2789340 GCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCACCTTT 2789281 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| || || ||||| || ||||| ||||| ||||| | ||| Sbjct 2789280 ACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTCCCAGTCAATGTC 2789221 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| |||||||| || Sbjct 2789220 TTGACAAAAATCTGCATGTT 2789201 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | || || || ||||| || || ||||| Sbjct 2789644 ATTCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2789585 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || ||||| || || || ||||| || || ||||| ||||| || Sbjct 2789584 GACAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGT 2789525 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || |||||||||||||| || || || || | ||||||| || || Sbjct 2789524 GGAATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCG 2789465 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || || || || || ||||| || ||||| || || || Sbjct 2789464 ACTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 >seq38 Length=2292016 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880 ||||| || ||| | | |||||| || || | ||||| || ||||| | | ||||| Sbjct 218749 TAAAAGATGACGAACGTACATTTATTTCACATGTCCTTGCATTCTTTGCTGCTTCTGATG 218808 Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940 ||||||| || |||||||| ||||| ||| |||| || ||||| || | ||||| Sbjct 218809 GTATCGTCAATGAAAATCTTGTAGAACGGTTTAGTCAGGAAGTACAAGTTACGGAAGCTC 218868 Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000 |||| ||||| |||||||| | ||||| |||||| ||||||| || ||||| |||| Sbjct 218869 GATGCTTTTATGGATTCCAAGTGGCTATGGAAAATGTTCATTCTGAAATGTATTCTCTAC 218928 Query 269001 TAATAGATACTTATAT 269016 ||||||| |||||||| Sbjct 218929 TAATAGACACTTATAT 218944 >seq20 Length=2461668 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || ||||||||||| || || || || ||||| | || |||||||| || | Sbjct 1189127 CTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGA 1189068 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| ||||| ||||| || || || || ||||| ||||| ||||| || || | Sbjct 1189067 TGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCT 1189008 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||||||| | || ||||| || || || ||||| || || || || || || | Sbjct 1189007 CGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACGA 1188948 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 1188947 AGATCTGCAT 1188938 >seq23 Length=3064571 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| ||| ||| ||||| ||||| | ||| | ||||| || || || || || ||||| Sbjct 1521372 TTTCTTTGCTCCACCTCTCAGCCTCAATACCAAGTGTAACGTTGACTCCTTTTGGATATT 1521431 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 || || || | |||||| || || || || || || ||||||||||||| |||||| || Sbjct 1521432 GTAATCCGACAAAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAAATTAACCTCTGCTG 1521491 Query 104443 ATCAGGAGGTATTCCTT 104459 |||||| || || |||| Sbjct 1521492 ATCAGGTGGAATGCCTT 1521508 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || |||||||| |||||||||||||| |||||||| | |||||| | ||| ||||| Sbjct 1521584 CCCTCTTTATCTTGAATCTTTGCTTTGACATTTTCGATGGTATCAGAGGCTTCAACCTCA 1521643 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || | || |||||||| |||||||| Sbjct 1521644 AGGGTAATGGTCTTCCCCGTTAAAGTCTTTACAAAAATCTGCAT 1521687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384591854688