Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq98 215 3e-51 seq131 93.3 2e-14 >seq98 Length=338101 Score = 215 bits (238), Expect = 3e-51 Identities = 369/531 (69%), Gaps = 6/531 (1%) Strand=Plus/Minus Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676 || ||||| | || ||||||||||| || || ||||| |||||||||||||| || | Sbjct 223663 AACGAATTATTGTACTTTGCTGACGTGTGTGCCGGTCCTGGTGGTTTCAGTGAGTACGTA 223604 Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGAT 3736 | | ||||| |||||| || ||||| | |||| | || ||| | |||||||| Sbjct 223603 CTGTACAGAAAAAAATGGCATGCAAAAGGATTTGGTTTTACATTAAAGAAGGAAAATGAT 223544 Query 3737 TTTCAACTGAACAGATTTTACGATA-ACTTTTCGGAAACTTTACACCCGTATTATGGTCC 3795 || | ||| || ||||| | | || | || ||||||| || || || ||||| || Sbjct 223543 TTCAAGCTGGACGACTTTTATGCTGGACCCTGCG-AAACTTTTCATCCTTACTATGGACC 223485 Query 3796 GCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGATTAT 3855 | ||||| ||| | | | || ||||||| | || |||| | || ||||||| Sbjct 223484 TAAAGATGATGGAAATGTGTTTGACTCCGAAAATCAAAGAGCTTTTAGAGATTTGATTAT 223425 Query 3856 GAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGA 3915 || | | || | ||| ||| |||||||| |||||| | || ||||| || || || | Sbjct 223424 GAGACAAACGAAGGGAGTAGGAGTACATTTCATGATGTCCGATGGTGGATTTTCTGTAAA 223365 Query 3916 GGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAAT 3975 || | || || || |||||||| ||||| || || |||| || || || ||||| | Sbjct 223364 GGACCGGGAGAACATTCAAGAAATCCTATCGCAACAGTTGTACTTATGCCAGTGTTTGGT 223305 Query 3976 TGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTAC 4035 | |||||||| | || ||||||||||| ||| | || | |||||||| || || Sbjct 223304 TAGCTTGATGATTGTTAGAGATGGTGGTCATTTTGTGACAAAGCTATTCGATATTTTCAC 223245 Query 4036 ACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTA--TTTGTATT 4093 ||||| |||| ||| | || ||| | ||||| | | |||| ||| | |||| | Sbjct 223244 TCCTTTCAGTGTTGGACTCGTTTATCTCATGTACCGCTGTTTT--TCGGAAGTTTGCCTA 223187 Query 4094 TTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 || || || |||| || |||||||| ||||| ||||| ||| || | ||| Sbjct 223186 TTTAAGCCCAATTCTTCACGACCGGCTAATTCCGAAAGGTATCTGATATGT 223136 >seq131 Length=4196362 Score = 93.3 bits (102), Expect = 2e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 5922 CCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGG 5981 |||||| || || || |||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 72231 CCAGATCTGCGCCGCCTACCCAGAGGGTGGAAAGGACGCCTGCCAGGGTGACTCCGGTGG 72172 Query 5982 CCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCGTGTCATGGGGTAATGGATGTGGTCG 6041 || | | || || |||| | ||||||||||| |||||||| |||||||| | Sbjct 72171 TCCCCTCGCCATCAATGGCCGCCTTGCTGGTATCGTCTCATGGGGAAATGGATGCGCCAA 72112 Query 6042 TACAGGATGGCCCGGAGCTTACACTGAAATCGCGCCGTTCCGACACTGGATTCT 6095 | |||||||| || | ||||| || |||| | | |||| |||||||||| Sbjct 72111 ACCTGGATGGCCTGGTGTCTACACCGAGGTCGCCTCTTACCGAGACTGGATTCT 72058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276550445214808