Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 127 1e-24 seq5 120 2e-22 >seq1 Length=6439362 Score = 127 bits (140), Expect = 1e-24 Identities = 86/96 (90%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| ||||| |||| |||||||||| |||||||||| |||||||||||||||||| Sbjct 4507383 TTAAAGAAAAAAAAAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 4507324 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||||||||| |||||||||||||||||||||||| Sbjct 4507323 CACGACGCTCTAACCAACTGAGCTAATGGGCCGTCG 4507288 Score = 118 bits (130), Expect = 6e-22 Identities = 83/94 (88%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || |||||| |||| |||||||||| |||||||||| |||||||||||||||||| Sbjct 4508627 AAGAAAAAA--AAATGTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 4508570 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| |||||||||||||||||||||| Sbjct 4508569 CACGACGCTCTAACCAACTGAGCTAATGGGCCGT 4508536 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 4508418 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 4508359 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 4508358 TGAGCTAATGGGCCGT 4508343 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4508041 AAAAAAAAATGAG--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4507984 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 4507983 GACGCTCTAACCAACTGAGCTAATGGGCC 4507955 >seq5 Length=2426760 Score = 120 bits (132), Expect = 2e-22 Identities = 81/89 (91%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| |||| |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 537629 AAAAAA--AAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 537686 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||| |||||||||||||||||||||| Sbjct 537687 CGCTCTAACCAACTGAGCTAATGGGCCGT 537715 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488217039136