Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq116 109 5e-19 >seq116 Length=4125705 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| || | || |||| |||| ||| | || || ||||| || | Sbjct 2789654 AAAAATCTGCATTCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGAT 2789595 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| || |||| | |||||| ||||| || ||| ||||||| | ||| || Sbjct 2789594 GTTGTAGTCGGACAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTG 2789535 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| ||||| || || ||||| | ||| |||||||| ||| ||| || || Sbjct 2789534 CTGATCTGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATC 2789475 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 | ||||| || | |||||||| || || ||||| || || || Sbjct 2789474 GGAAGCCTCGACTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 || ||||| | || || || ||||| | ||| ||||| ||| ||| || ||| | Sbjct 2790079 ACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAG--ATAATGTGCGACCATCTT 2790022 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | | ||| || ||| | ||||| || ||||| |||||||| ||||| ||||||||||| | Sbjct 2790021 CTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCT 2789962 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||| ||| | | ||||| | || || || | || ||||| | Sbjct 2789961 GAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCT 2789902 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| || || |||||||||||||| Sbjct 2789901 TGCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || || || ||||||||||||| |||||||| |||||||| |||||||| Sbjct 2790482 ATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTT 2790423 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || | |||||| | | ||||| | || || || | ||||| Sbjct 2790422 ATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGAT 2790363 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| || ||||| || ||||||||||||| Sbjct 2790362 TGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCATGC 2790325 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||||| || || |||| ||||||||||||||| | |||||||| | Sbjct 2790325 CCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGAC 2790266 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| || | || || || | ||||| ||||| ||||| || || || Sbjct 2790265 AGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGG 2790206 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || || || ||| | | || || | ||||| Sbjct 2790205 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACC 2790146 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || |||||||| || |||||||||||||| Sbjct 2790145 TCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || ||||| || | ||| |||||| ||| ||| | |||||| || ||||| | Sbjct 2790979 GTGGACTCCTTCTGGATGTTGTAATCGG--ATAATGTGCGTCCATCCTCGAGTTGTTTCC 2790922 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | ||||| | || || || || || ||||| ||||| || || | |||||| ||| Sbjct 2790921 CAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTGAATTTTGACCT 2790862 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | ||| ||| ||||| | ||||| || | ||||||||||| || || || | Sbjct 2790861 TTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTTCCCGGTGAGGG 2790802 Query 94989 TTTTCACAAAGATCTGCAT 95007 | ||||| ||||||||||| Sbjct 2790801 TCTTCACGAAGATCTGCAT 2790783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285954992960