Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq508 206 4e-49 seq464 197 2e-46 seq145 145 1e-30 >seq508 Length=25599 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | |||||| ||||||||||| ||||| || ||||||||||| Sbjct 10979 GCGAAGCGCCATAGAAAAGTTCTTCGTGATAACATCCAGGGAATTACGAAGCCAGCTATT 11038 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| |||||||| ||||| ||| ||||||| ||| | |||||||| | | Sbjct 11039 CGCCGTCTCGCTCGCCGTGGTGGTGTCAAACGTATCTCTGGTTTGATATATGAAGAAACT 11098 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | || ||||||| ||| |||||| | ||||||| | || ||||| Sbjct 11099 AGAGGTGTCCTTAAAGTCTTCCTTGAGAACGTTATTCGTGATGCTGTTACTTACACCGAA 11158 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| || ||| |||||||| | |||||||| ||||||||||||| Sbjct 11159 CATGCCAAGAGGAAGACAGTAACCGCCATGGATGTGGTCTATGCTCTGAAACGTCAAGGA 11218 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| ||||||||| ||||| Sbjct 11219 CGTACCCTTTACGGTTTTGGAGGTTAA 11245 >seq464 Length=178954 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | ||||||||||||||| |||||||||||||| || ||||| Sbjct 150132 GCTAAACGTCATCGAAAGGTTCTTCGAGATAACATTCAAGGAATCACCAAACCCGCTATT 150191 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || ||||||||||| |||||| ||||||||||| |||||||||| | Sbjct 150192 CGTCGTTTGGCACGCCGTGGTGGAGTAAAGCGTATCTCTGGATTGATCTATGAAGAAACA 150251 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | || || | | |||||| | ||||||| | ||||| || Sbjct 150252 CGAGGAGTGTTGAAAGTATTTCTGGAAAACGTTATTCGTGATGCTGTTACTTATACTGAA 150311 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 150312 CACGCGAAAAGGAAGACGGTTACAGCAATGGACGTTGTATACGCTTTGAAACGACAAGGA 150371 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || |||||| ||||| Sbjct 150372 CGTACTTTGTACGGATTTGGAGGTTAA 150398 >seq145 Length=2710478 Score = 145 bits (160), Expect = 1e-30 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||||||||| ||||| || || ||||| || ||||||||||| ||||| || |||||| Sbjct 672556 CGAGATAACATTCAAGGTATTACGAAGCCCGCGATCCGTCGTCTAGCTCGGCGAGGTGGA 672615 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || | || || | | || ||||| | | | ||| | ||| | ||||| Sbjct 672616 GTGAAACGAATTTCAGGCCTCATTTACGAAGAAACCAGAGGAGTTCTCAAGGTATTCCTT 672675 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| |||||| | ||||| || || ||||| ||||| || | || || || ||| Sbjct 672676 GAGAACGTTATTCGAGATGCCGTCACTTACACCGAACACGCAAAGAGGAAAACCGTTACC 672735 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| |||| ||||| ||||||||||||| |||| | || || |||||| || Sbjct 672736 GCGATGGACGTCGTTTATGCCCTGAAACGTCAAGGACGTACTTTATACGGATTTGGAGGT 672795 Query 16697 TAATCTTCTAATC 16709 ||||| ||| ||| Sbjct 672796 TAATCATCTTATC 672808 Score = 134 bits (148), Expect = 2e-27 Identities = 178/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| ||||| |||||||| ||||| |||||||| |||||||| || Sbjct 23570 TCTTCGTGATAACATCCAGGGAATTACCAAGCCTGCTATTCGTCGTCTCGCTCGTCGAGG 23629 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| | || || | | |||||||| | | | ||| | || | || Sbjct 23630 CGGTGTAAAGCGTATTTCCGGCCTTATTTATGAAGAAACCAGAGGAGTTCTAAAAGTATT 23689 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | ||| || | ||||| || || || ||||| || ||| | || || || Sbjct 23690 CCTTGAAAACGTGATTCGAGATGCGGTCACTTACACTGAGCATGCCAAAAGGAAAACCGT 23749 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || ||||| | ||||| |||||||| | | || || ||||| Sbjct 23750 TACTGCCATGGATGTTGTATATGCCCTAAAACGCCAAGGCCGCACTCTCTACGGATTTGG 23809 Query 16693 AAGTTAA 16699 | ||||| Sbjct 23810 AGGTTAA 23816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074344208648