Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05]
936 sequences; 201,220,334 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq508 206 4e-49
seq464 197 2e-46
seq145 145 1e-30
>seq508
Length=25599
Score = 206 bits (228), Expect = 4e-49
Identities = 206/267 (77%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| ||| | | | |||||| ||||||||||| ||||| || |||||||||||
Sbjct 10979 GCGAAGCGCCATAGAAAAGTTCTTCGTGATAACATCCAGGGAATTACGAAGCCAGCTATT 11038
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| ||||| |||||||| ||||| ||| ||||||| ||| | |||||||| | |
Sbjct 11039 CGCCGTCTCGCTCGCCGTGGTGGTGTCAAACGTATCTCTGGTTTGATATATGAAGAAACT 11098
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | ||| | || ||||||| ||| |||||| | ||||||| | || |||||
Sbjct 11099 AGAGGTGTCCTTAAAGTCTTCCTTGAGAACGTTATTCGTGATGCTGTTACTTACACCGAA 11158
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || | ||||| || ||| |||||||| | |||||||| |||||||||||||
Sbjct 11159 CATGCCAAGAGGAAGACAGTAACCGCCATGGATGTGGTCTATGCTCTGAAACGTCAAGGA 11218
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| |||| ||||||||| |||||
Sbjct 11219 CGTACCCTTTACGGTTTTGGAGGTTAA 11245
>seq464
Length=178954
Score = 197 bits (218), Expect = 2e-46
Identities = 204/267 (76%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | ||||||||||||||| |||||||||||||| || |||||
Sbjct 150132 GCTAAACGTCATCGAAAGGTTCTTCGAGATAACATTCAAGGAATCACCAAACCCGCTATT 150191
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| |||| || ||||||||||| |||||| ||||||||||| |||||||||| |
Sbjct 150192 CGTCGTTTGGCACGCCGTGGTGGAGTAAAGCGTATCTCTGGATTGATCTATGAAGAAACA 150251
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | || || | | |||||| | ||||||| | ||||| ||
Sbjct 150252 CGAGGAGTGTTGAAAGTATTTCTGGAAAACGTTATTCGTGATGCTGTTACTTATACTGAA 150311
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||| | ||||| || || | ||||| | || || || |||||||| |||||
Sbjct 150312 CACGCGAAAAGGAAGACGGTTACAGCAATGGACGTTGTATACGCTTTGAAACGACAAGGA 150371
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | || || |||||| |||||
Sbjct 150372 CGTACTTTGTACGGATTTGGAGGTTAA 150398
>seq145
Length=2710478
Score = 145 bits (160), Expect = 1e-30
Identities = 184/253 (73%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
||||||||||| ||||| || || ||||| || ||||||||||| ||||| || ||||||
Sbjct 672556 CGAGATAACATTCAAGGTATTACGAAGCCCGCGATCCGTCGTCTAGCTCGGCGAGGTGGA 672615
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| || || | || || | | || ||||| | | | ||| | ||| | |||||
Sbjct 672616 GTGAAACGAATTTCAGGCCTCATTTACGAAGAAACCAGAGGAGTTCTCAAGGTATTCCTT 672675
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| |||||| | ||||| || || ||||| ||||| || | || || || |||
Sbjct 672676 GAGAACGTTATTCGAGATGCCGTCACTTACACCGAACACGCAAAGAGGAAAACCGTTACC 672735
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
| ||||| |||| ||||| ||||||||||||| |||| | || || |||||| ||
Sbjct 672736 GCGATGGACGTCGTTTATGCCCTGAAACGTCAAGGACGTACTTTATACGGATTTGGAGGT 672795
Query 16697 TAATCTTCTAATC 16709
||||| ||| |||
Sbjct 672796 TAATCATCTTATC 672808
Score = 134 bits (148), Expect = 2e-27
Identities = 178/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| ||||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||
Sbjct 23570 TCTTCGTGATAACATCCAGGGAATTACCAAGCCTGCTATTCGTCGTCTCGCTCGTCGAGG 23629
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || |||||| | || || | | |||||||| | | | ||| | || | ||
Sbjct 23630 CGGTGTAAAGCGTATTTCCGGCCTTATTTATGAAGAAACCAGAGGAGTTCTAAAAGTATT 23689
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| | | ||| || | ||||| || || || ||||| || ||| | || || ||
Sbjct 23690 CCTTGAAAACGTGATTCGAGATGCGGTCACTTACACTGAGCATGCCAAAAGGAAAACCGT 23749
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| | || ||||| | ||||| |||||||| | | || || |||||
Sbjct 23750 TACTGCCATGGATGTTGTATATGCCCTAAAACGCCAAGGCCGCACTCTCTACGGATTTGG 23809
Query 16693 AAGTTAA 16699
| |||||
Sbjct 23810 AGGTTAA 23816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074344208648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |