Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq116 138 1e-27 seq38 91.5 2e-13 >seq116 Length=4125705 Score = 138 bits (152), Expect = 1e-27 Identities = 228/322 (71%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 |||| || ||||| || | ||||| || |||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 62797 TATCTATAATTTTATTGAGATT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62853 ||||||| | || || ||||| | | |||| ||||| | || || |||||||| | Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAA--CCTTTG-CGACTTCTTTCAGTTTAA 2592080 Query 62854 GAAAATCAAA-----TCGCCCATCTATT-ACAAACATGTTCAAGGCAACAGATGCCAGAT 62907 ||| ||||| | | | ||| ||||||||||||| || | || || | || Sbjct 2592081 CAAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAAT 2592140 Query 62908 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62967 | || |||||||| |||| || | | ||| | | || || || || ||||| || | Sbjct 2592141 TGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGC 2592200 Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 63026 || || || |||| |||||||||||| | ||| | || || ||| ||||| || Sbjct 2592201 TTTTAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGC 2592259 Query 63027 ATGAATGGAGTACCAGTTTCAA 63048 ||| | ||||| |||||||||| Sbjct 2592260 ATGTACGGAGTTCCAGTTTCAA 2592281 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 62322 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62381 ||||| || || || | ||||| ||||| || | |||| || || || || |||||| Sbjct 2591385 AGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTG 2591444 Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 || |||||||| | || || || ||||||||||| || || || ||||| || ||||| Sbjct 2591445 GTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATT 2591504 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62501 || || | | ||| ||| | || ||||| | || ||||| ||||| |||| | || Sbjct 2591505 GGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCC 2591564 Query 62502 CAATTCCAAAGAT 62514 || |||||||||| Sbjct 2591565 CAGTTCCAAAGAT 2591577 Score = 107 bits (118), Expect = 2e-18 Identities = 179/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || |||||||| || | | || | ||| ||||| ||||| ||||| || ||||| Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | || || | | |||||| || || ||| | || |||||| || ||||||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 | || || |||||||||| ||| ||||| ||||||||||||| ||| || || || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATCTTT 2593233 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 | | ||| | | || | |||||||||||||| || || || ||| |||| || Sbjct 2593234 AGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 2593293 Query 63831 TAAATAATAACCGAGTTGA 63849 |||||||| | || |||| Sbjct 2593294 TAAATAATTGCAGAATTGA 2593312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 |||| |||| | ||| || | | |||||||||| || ||||||||||| || | | Sbjct 2592423 GTGTGTACAGTTCTTCAAATTTTTTGCCCCAAACATCATCTAATCCAGGACACTCGTGAG 2592482 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 ||||||| || ||||| | || || || |||||||||||||| ||||||||||||| Sbjct 2592483 GACACATTAAAGACCATTTGCCATCGTCAAAGACTCGTTTCATAAACAGATCAGGAATCC 2592542 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 | | || ||| | ||||| | | ||| ||||| || |||||| Sbjct 2592543 ACAAGGCATAAAACAATTCTCTTGCACGATGCTCCTCTTTGCCTGTA 2592589 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| || ||||| || || | ||| || || || |||| ||| ||||| || ||||| || Sbjct 2593511 TTTCTTAGTTTCTTTATGCAAATTCGAAACAGCAATTCGGGCTGCTAGTATTGCATAGTC 2593570 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 | |||| ||| || ||| || || |||| ||||| ||| | || | ||||||||| Sbjct 2593571 TGCGTGTTTTGTCGTCATAGTCGCAGCAGTTTCAGCTGCTAGATTATCAAGTTCTACCGT 2593630 Query 64085 TGTTACTCCA 64094 |||||||||| Sbjct 2593631 TGTTACTCCA 2593640 >seq38 Length=2292016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 33136 CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 33195 || || || || ||||| ||||| ||| | || || ||||| || || | || | Sbjct 219544 CTGTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAGTTCATACCAATCATTTCA 219485 Query 33196 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 33255 ||||| ||||| | || | |||||||||||| || || |||| ||||||| ||| Sbjct 219484 ACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACGGCATTCTTTATAATGGAT 219425 Query 33256 CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315 ||||| ||||| |||| || | | |||||||||||||||||| || || || Sbjct 219424 GTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAACATCAAACACGCAAAGTCA 219365 Query 33316 CAGTGCAGACCCT 33328 || |||| ||||| Sbjct 219364 CAATGCAAACCCT 219352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939911517760